Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028465 |
| length | 726 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 6 |
| gene id | XLOC_014340 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 47394270 ~ 47423628 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0010498 | proteasomal protein catabolic process | biological_process |
| GO:0010499 | proteasomal ubiquitin-independent protein catabolic process | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0005839 | proteasome core complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0000502 | proteasome complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004175 | endopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| id | description |
|---|---|
| ko03050 | Proteasome |
| ko05010 | Alzheimer disease |
| ko05012 | Parkinson disease |
| ko05014 | Amyotrophic lateral sclerosis |
| ko05016 | Huntington disease |
| ko05017 | Spinocerebellar ataxia |
| ko05020 | Prion disease |
| ko05022 | Pathways of neurodegeneration - multiple diseases |
| ko01002 | Peptidases and inhibitors |
| ko03051 | Proteasome |
| id | description |
|---|---|
| ZDB-GENE-040718-353 | Predicted to enable peptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMB2 (proteasome 20S subunit beta 2). |
| ensembl_id | ENSDART00000171281 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030051 | lncRNA | upstream | 56113 | 47337582 ~ 47338157 (+) | True | XLOC_014339 |
| TCONS_00030050 | lncRNA | upstream | 202769 | 47188530 ~ 47191501 (+) | True | XLOC_014334 |
| TCONS_00030049 | lncRNA | upstream | 956135 | 46423091 ~ 46438135 (+) | True | XLOC_014331 |
| TCONS_00030048 | lncRNA | upstream | 1113339 | 46240507 ~ 46280931 (+) | False | XLOC_014327 |
| TCONS_00029735 | lncRNA | upstream | 1175230 | 46216335 ~ 46219040 (+) | False | XLOC_014325 |
| TCONS_00030052 | lncRNA | downstream | 14576 | 47438204 ~ 47448594 (+) | True | XLOC_014341 |
| TCONS_00029737 | lncRNA | downstream | 166401 | 47590029 ~ 47591236 (+) | True | XLOC_014345 |
| TCONS_00029738 | lncRNA | downstream | 359464 | 47783092 ~ 47784972 (+) | False | XLOC_014346 |
| TCONS_00030053 | lncRNA | downstream | 374261 | 47797889 ~ 47800811 (+) | True | XLOC_014347 |
| TCONS_00028472 | lncRNA | downstream | 414975 | 47838603 ~ 47843652 (+) | True | XLOC_014348 |
| TCONS_00028464 | mRNA | upstream | 57862 | 47311869 ~ 47336408 (+) | True | XLOC_014338 |
| TCONS_00028463 | mRNA | upstream | 58268 | 47311020 ~ 47336002 (+) | False | XLOC_014338 |
| TCONS_00028460 | mRNA | upstream | 85044 | 47299212 ~ 47309226 (+) | False | XLOC_014336 |
| TCONS_00028461 | mRNA | upstream | 85044 | 47301893 ~ 47309226 (+) | True | XLOC_014336 |
| TCONS_00028458 | mRNA | upstream | 95613 | 47290287 ~ 47298657 (+) | True | XLOC_014335 |
| TCONS_00028468 | mRNA | downstream | 53280 | 47476908 ~ 47481618 (+) | True | XLOC_014342 |
| TCONS_00028469 | mRNA | downstream | 78953 | 47502581 ~ 47523302 (+) | True | XLOC_014343 |
| TCONS_00028471 | mRNA | downstream | 359509 | 47783137 ~ 47787275 (+) | True | XLOC_014346 |
| TCONS_00028475 | mRNA | downstream | 594836 | 48018464 ~ 48023442 (+) | False | XLOC_014352 |
| TCONS_00028476 | mRNA | downstream | 594841 | 48018469 ~ 48023271 (+) | False | XLOC_014352 |
| TCONS_00028459 | other | upstream | 84887 | 47299166 ~ 47309383 (+) | False | XLOC_014336 |
| TCONS_00028462 | other | upstream | 87532 | 47306623 ~ 47306738 (+) | True | XLOC_014337 |
| TCONS_00028450 | other | upstream | 1113339 | 46243620 ~ 46280931 (+) | False | XLOC_014327 |
| TCONS_00028436 | other | upstream | 1885289 | 45508865 ~ 45508981 (+) | True | XLOC_014316 |
| TCONS_00028433 | other | upstream | 3362106 | 44009473 ~ 44032164 (+) | False | XLOC_014312 |
| TCONS_00028470 | other | downstream | 150987 | 47574615 ~ 47574823 (+) | True | XLOC_014344 |
| TCONS_00028474 | other | downstream | 594378 | 48018006 ~ 48018346 (+) | True | XLOC_014351 |
| TCONS_00028479 | other | downstream | 595178 | 48018806 ~ 48023408 (+) | False | XLOC_014352 |
| TCONS_00028484 | other | downstream | 609671 | 48033299 ~ 48033440 (+) | True | XLOC_014354 |
