RNA id: TU207813



Basic Information


Item Value
RNA id TU207813
length 2154
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G183177
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74156622 ~ 74226257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAATGTTTTATTCCGTAACAGAGAAAAATGGTCACGCCAATACTGGGTGCACATACGAGACTGGCCCAAAACCAGGACCCAACCCGTCCGTGGGAAACGCACCACCACAAACATAAACAGAGGAAAATGAAgcccgcacaaagagcaggcgggccttaccggcttaaatagcccaactaaaaacttaaacaagaaacaggtgtaaccaataagacaaaaccaacagacaagggaaaagggatcggtggcagctagtagaccggtgacaacgaccgccacccgaacaggaagaggagccaccttcggtgggagtcgtgacagtTGTGTTTGCTGCCAGCTGGTTGATCTCAACAGCCATCTAAAAGTGAATTCTCAATTGTGGTACGtttctagaaacataaatccaTCCActttcatatcacaaaatatattcacaaatgcaaaatacacaCTCACTGTATACTGTTTTAATCGGTTTTAACACAGTTGTAGCTGACAGTATTTTTCAGGGACAACACGTTTGTGGCCTCCATCTTCCATTTATACACAGGTGTTCGAAAGACGCatatagctaattagcacaggtagtcCAGTTGGTCTTCCGTCTGTTGTCCGTGTGGGAATCCTAACCCTATAAAATTGTGCATCAATTTAATCTTTTGTTTTTTGAAAATAATTTATTGCCGATGTGAAATACaaggtccttatgcttccaaaactgTACCGCAAATGATTCATGATAATGTTCGGAAAGAGCGTCATGGCTCTCTTCCCCCTACAGATAACGGCACCGTCCAATGActtttatgtgtaatgtaatgcaacagagagtcatgatcaagggctagcTGCACACAAGCTTCTGGACATCCAGATCCCAGTAGCCTTCAATACAGTCCATACAGTAGCTGTGTCCAGAAGGAATAGTCACCGGATCCTTCAGTATCTCCTAACATATTGAACAACTGATCAAGTCCATGGCATCTGCCATTTTGAAATGCAAGTGCTTTATCCATGGCatagaccaggtgaatccaggtgaaagcaatgatcCCTTTTGGTGTCACTtgtcaaatccacttcaatcagtgtagatgaaggggaggagacagattaaataaggatgtttaagccttgagacatgtattgggtatgtgtgccattcagagggtgaatgggcaatatttaagtgcctttgaacagggtatagtAATTTGTGTACACTGATGCCTAACATTAGAATCAATCCCTTTCAGTGACATAGACTGTGGACAGTTCATATTTTAACAGTAGTGCACATGTTGTGCATTCACCAGCAGTTTGTATCATAAAATAATGTTAAGTCTGTCAGGTTGAAACAGATTGCATGATGTATATGTACACAGTGAAAGTCAATAAGTGTAGATAAATATGTGTTTCTTTCCAAACAATGCAAACAACTCATTGTCAATGGAGCTTGTGCAAAGCTGATGTCTAACAGAGTAAATCCATTTCATTGAAATGGACTGCATCCTCTGAATAGTGTGAAGGTATTATGTTATTGTGTCAGGCTGAAAAAGATTTTACGATGCTTATGAACACACTGAAAGTCAATGAGTGTAGATAAAACTTTGTTAATTTACTATATTGGTGTCAGTATCTTCACAGATGATCCATAACCAGGACCAACCCAGAATCCAGGGTAGAGgggctgagtgaatgtggtctggactctgtggaggagggtcatcttgtcagagacactgtagaaggacagagttCCTGCCTTGTGGTCcaggtacactcctactctggaggAGCAGGGGGTAGGGATATCAGTATTGATATTATTGTGCCTGAAATAGCAGATAGACGGATCACAGACCAAAGTCCAGGACTGATAATTTCGTCCAAAGCTAACATccactccatctcctctcctgcaGATCCCTTTATAAGACACGGCAACTTTACACTTGCTTCCACTCCTTTCTACCTCCCAGTAGCAGGTTCCAGACAAAGCTTCTTTACACAACAGCTGGCAGTAGAAGTtaaatctgtctggatggtgaagATAGGACTCAGCGTTTTCACTCCTGGTCACCTTCCTGTTCCCCTCAGACAGACGCAGATATCTATTAGCTGTGTTGGGGTCCAATGTGAGCTGGCAGGAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207806 lncRNA upstream 277 74155844 ~ 74156345 (+) True G183176
TU207805 lncRNA upstream 1064 74155246 ~ 74155558 (+) True G183175
TU207798 lncRNA upstream 14977 74141347 ~ 74141645 (+) True G183168
TU207780 lncRNA upstream 26751 74060896 ~ 74129871 (+) False G183152
TU207816 lncRNA downstream 1239 74163092 ~ 74168006 (+) False G183177
TU207824 lncRNA downstream 1239 74163092 ~ 74167105 (+) True G183177
TU207831 lncRNA downstream 11782 74173635 ~ 74177682 (+) True G183182
TU207904 lncRNA downstream 98520 74260373 ~ 74261170 (+) True G183226
TU208036 lncRNA downstream 276560 74438413 ~ 74438688 (+) True G183346
XM_021571609.2 mRNA upstream 17120 74126223 ~ 74139502 (+) True LOC110495996
XM_021571578.2 mRNA upstream 45798 74069966 ~ 74110824 (+) True LOC110495989
XM_021571589.2 mRNA upstream 52373 74069964 ~ 74104249 (+) False LOC110495989
XM_021571532.2 mRNA upstream 146063 73999269 ~ 74010559 (+) True LOC110495967
XM_021571509.2 mRNA upstream 171885 73891247 ~ 73984737 (+) False LOC110495946
XM_021571685.2 mRNA downstream 16630 74178483 ~ 74198686 (+) False LOC110496029
XM_021571668.2 mRNA downstream 16725 74178578 ~ 74198686 (+) False LOC110496029
XM_021571660.2 mRNA downstream 17639 74179492 ~ 74198686 (+) False LOC110496029
XM_021571676.2 mRNA downstream 17639 74179492 ~ 74198686 (+) True LOC110496029
XM_021571706.2 mRNA downstream 48610 74210463 ~ 74221530 (+) False LOC110496053
TU206688 other upstream 532104 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 546385 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 576547 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 814345 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 367796 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 549728 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 724245 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 875399 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 924769 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile