RNA id: TU207810


Basic Information

Item Value
RNA id TU207810
length 2530
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G183177
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74156622 ~ 74226257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccattcaagtcatggtacCGATATAAGCATTTTTCAcgcatcatgtccaaatcatccaaaAGCATTTCAAATTGATTGTGAAACTCAACAAAGTCACTTATAGATGATTTGAACATAATGCGCGGAAAATGCTAATATTGGTACCATGACTTGAAaaggatttgtgccacaaatgctaaaacgttagcatATGGAAAAAGTGCTAGAGAAACTAAACCAAGCATTCATTGTcatcataccttgtccatagactgtttACAGGGTATGAAAATCAACATGTAATTttataatttgggtgaactattaGGGgatcccaagtggcgcagcagtcaatggcactgcatctcagtgcccgaggcgtcactacagaccctagttcgattccaggctgtatcacaaccggacatgattgggagtcccttagggtggtgcacaattggactagcattgtccgggttagggtttggcacaattggcctagcgttgtccgggttagggtttggcacaattggcctagtgtcgtccgggttagggtttggcacaattggcctagcgtcgtccgggttagggtttggccgtggtaggcggtcattgtaaataagaatttgttcttaaccgacttgcctggttatatatatatatatatatatatatatccctttaAGCGCTAAATGTGGTGATGCTGTGTTGTTGAGATCATGCAAGACACAAAATAAGAGGCACAAagaatgattattattattatcatcccACCCATTCACTCAGCTCACACCAGGACCCCAGATAGCCTATTCCCCACACTGGGACTCAGTGGTGTTTGAATGAGGCCCTGCATGGGCTCCTCAATGGCTTTAGTCTAGGAATCTGCTAATTCAATAAACTACATGTGAGTTGTCAACACTCaaaacaaataaatcaaatcaaatgtattttgtcacatacacatggttagcagatgttaatgcgagtgtagtgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacgagtaatctaacctaactaTTCCAAatctactaccttatacacacaagtgtaaagggataaagaatatgtacataaagatatatgaatgagtgatggtacagaactcACCTTAAGTTTCACCTGAATCTTCTTCGTATCTATTTCTGTCAGTGTTTCCACCAATTCTGCAATGACAGTGTTTTTTTTCAGAACAGGCCTTGTAGGGAAGATCTGTCTGCACTGGGGGCAGCTGCAGACAAGCTTCTGATCCCAGAAGCATTTAATACAGTCCATACAGTAGCTGTGTCCACAGGGAATAGTCACTGGATACTTCAGTATCTCCAAACAGATTGAACAACTGATTGAGTCCATGGCTTCTGCCATTTTGAAACGCAAGCAGACTGAGCTGAAGAGATGAGTTTCGTTTCCAATTGTGCTGAGGAGTAGGCTTAGGAGTGGCTCCCACTAACCCATATAGCATTTCACTTCCTGGATCTGAACTCACGTATCAGATACCAGGTCTGGCCAGCAGAGGGGCTACAAGTGGTCTGTCAcaaccatagagagagagagaactttctTATTGTAAGTTTGAGATTGAATGACATTTACTAGAACAGCCATAACCCTTCAAGTCAAAGCTCCATAACTGTGGACCGGCAGCCATTTAAACATCAACTCAACAAAACATATAATACAAAAGAAACATCCATTCCATGAGCTACATCAGATTGCATAGAATTTATTTCAACAAACAATGCAAACAGCTCATTGTCAATGGAGCTTGTGCAAAGCTGATGTCTAACAGATTAAATCCCTTTCATTGAAATGGACTGCATCCTCTGAATAGTGCACAGATGCACTCACTTGTAGATTGTATTACTGTTTTCATAAAGGTATTATGTTACTGTGTCAGGCTGAAAAAGATTTTACGATGCTTATGAACACACTGAAAGTCAATGAGTGTAGATAAAACTTTGTTAATTTACTATATTGGTGTCAGTATCTTCACAGATGATCCATAACCAGGACCAACCCAGTATCCAGGGTAGAGgggctgagtgaatgtggtctggactctgtggaggagggtcatcttgtcagagacactgtagaaggacagagttCCTGCCTTGTGGTCCAGGTAGACTCCTACTCTGGAGGAGCAGGGGGTAGGGATATCAGTATTGATATTATTGTGCCTGAAATAGCAGATAGACGGATCACAGACCAAAGTCCAGGACTGATAATTTCGTCCAAAGCTAACATccactccatctcctctcctgcaGATCCCTTTATAAGACACGGCAACTTTACACTTGCTTCCACTCCTTTCTACCTCCCAGTAGCAGGTTCCAGACAAAGCTTCTTTACACAACAGCTGGCAGTAGAAGTtaaatctgtctggatggtgaagATAGGACTCAGCGTTTTCACTCCTGGTCACCTTCCTGTTCCCCTCAGACAGACGCAGATATCTATTAGCTGTGTTGGGGTCCAATGTGAGCTGGCAGGAATCTGAAATTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207806 lncRNA upstream 2990 74155844 ~ 74156345 (+) True G183176
TU207805 lncRNA upstream 3777 74155246 ~ 74155558 (+) True G183175
TU207798 lncRNA upstream 17690 74141347 ~ 74141645 (+) True G183168
TU207780 lncRNA upstream 29464 74060896 ~ 74129871 (+) False G183152
TU207831 lncRNA downstream 5629 74173635 ~ 74177682 (+) True G183182
TU207904 lncRNA downstream 92367 74260373 ~ 74261170 (+) True G183226
TU208036 lncRNA downstream 270407 74438413 ~ 74438688 (+) True G183346
TU208046 lncRNA downstream 284532 74452538 ~ 74457151 (+) True G183354
TU208175 lncRNA downstream 563233 74731239 ~ 74732563 (+) True LOC110496107
XM_021571609.2 mRNA upstream 19833 74126223 ~ 74139502 (+) True LOC110495996
XM_021571578.2 mRNA upstream 48511 74069966 ~ 74110824 (+) True LOC110495989
XM_021571589.2 mRNA upstream 55086 74069964 ~ 74104249 (+) False LOC110495989
XM_021571532.2 mRNA upstream 148776 73999269 ~ 74010559 (+) True LOC110495967
XM_021571509.2 mRNA upstream 174598 73891247 ~ 73984737 (+) False LOC110495946
XM_021571685.2 mRNA downstream 10477 74178483 ~ 74198686 (+) False LOC110496029
XM_021571668.2 mRNA downstream 10572 74178578 ~ 74198686 (+) False LOC110496029
XM_021571660.2 mRNA downstream 11486 74179492 ~ 74198686 (+) False LOC110496029
XM_021571676.2 mRNA downstream 11486 74179492 ~ 74198686 (+) True LOC110496029
XM_021571706.2 mRNA downstream 42457 74210463 ~ 74221530 (+) False LOC110496053
TU206688 other upstream 534817 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 549098 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 579260 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 817058 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 361643 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 543575 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 718092 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 869246 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 918616 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile