RNA id: TU208418


Basic Information

Item Value
RNA id TU208418
length 826
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id G183672
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74196872 ~ 74198670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTGTTTAATTCAATACAAACAACTTCAGGGGATGAGGAGTGAACAACCATTTCAATCTCAATCCATACATTAACAATCAACAAGATAAATTATGAAATCGTCAAGTGCAAATCATTACACAAATAATTTCAACTTTTCTATTCCAAACAACATTCCAACTACTTCAAATAGGCAGAAAAATACTGCTGTGTAAAAAAACAAGGTTGAGAAATACAGAACGGACCCTTCATTAATCCTCCATGACCATGAAATGAACATATTTCAAATATAGTActaaattaaataaaacattttattttatttacagtagCACAGCATAGTAATTCATTTCAAACTGGGGACTAAATTATAGTATTTAAACTATTATTGAATATTACATTAGAGTATTTCAAATATCTGACTGTGATTTATGTACAATAGACAATGTGTTCTTCTAGGATCTCATGGAGTCTGAATCCATACCCTGGGCTTTAGCCTGCAGGCGTTTGTATTTCTTGGCCAGGTCAACGTTGGTGCGTCCCGGCTGGAACGGATAGGCCCAAAGGATGGAGTTCCAGGATGGACCAAACCGCTCTATACCGCGACACAGATAACTCTCCTCCTCACGGCTGaagttcctcctctccctcctctcattgGTATTCACCCTCTTTTCCTTGGTTTTGGAACTGCTCTGAGTCAAAGATGGGTTTCCCATAGAAAGAGTCTTCTGCTGATCATCCATGACACCGTCCTCCCCATCCATGACACCGTCCTCCCCATCCATGACACCGTCCTCCCCATCCATGACACCGTCCTCCCCATCCATGACACCGTCCTCCCt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208337 lncRNA downstream 52086 74144585 ~ 74144786 (-) True G183631
TU208303 lncRNA downstream 53819 74141037 ~ 74143053 (-) True G183602
TU208298 lncRNA downstream 76604 74119058 ~ 74120268 (-) True LOC118941541
TU208244 lncRNA downstream 176776 74019259 ~ 74020096 (-) True G183544
TU207735 lncRNA downstream 182491 74010498 ~ 74014381 (-) True LOC110495977
TU208302 lncRNA upstream 16647 74215317 ~ 74221649 (-) True G183601
TU208362 lncRNA upstream 42567 74241237 ~ 74251039 (-) False LOC110501892
TU208363 lncRNA upstream 42567 74241237 ~ 74251039 (-) False LOC110501892
TU208372 lncRNA upstream 42567 74241237 ~ 74251039 (-) False LOC110501892
TU208380 lncRNA upstream 42567 74241237 ~ 74251039 (-) False LOC110501892
XM_036955486.1 mRNA downstream 29522 74157073 ~ 74167350 (-) False LOC110496015
XM_036955490.1 mRNA downstream 29523 74161055 ~ 74167349 (-) False LOC110496015
XM_036955479.1 mRNA downstream 29532 74164132 ~ 74167340 (-) True LOC110496015
XR_005037845.1 mRNA downstream 55996 74119066 ~ 74140876 (-) False LOC118941541
XM_021571622.2 mRNA downstream 70663 74122283 ~ 74126209 (-) True LOC110496007
XM_036955505.1 mRNA upstream 42567 74241237 ~ 74303895 (-) False LOC110501892
XM_036955506.1 mRNA upstream 42567 74241237 ~ 74303895 (-) False LOC110501892
XM_036955507.1 mRNA upstream 42567 74241237 ~ 74303895 (-) False LOC110501892
XM_036955503.1 mRNA upstream 42567 74241237 ~ 74349349 (-) False LOC110501892
XM_036955496.1 mRNA upstream 42567 74241237 ~ 74349351 (-) False LOC110501892
TU208238 other downstream 86081 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 203327 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 520449 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 851025 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 1118493 73076027 ~ 73078379 (-) True LOC110495704
TU208774 other upstream 532202 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1407557 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1678689 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1786489 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 1894500 76093170 ~ 76099850 (-) True adm2b

Expression Profile