RNA id: TU208036


Basic Information

Item Value
RNA id TU208036
length 276
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G183346
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74438413 ~ 74438688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattcaatgtttttttcagtgagcaactccagtatagatttggccttgtgttttaggttattgtcctgctgaaagatgaattcatctcccagtgtctggtgaaaagcagactgaattaagtttttctctaggattttgcctgtgcttaactccattctgtttcttttttgtgCTGAAAAACTCCCCCTTCCTTAACTATTACAAGCATaccgataacatgatgcagccagcagtggtactcagtaatgtgttgtattgtatttgcctcaaacataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207904 lncRNA upstream 177243 74260373 ~ 74261170 (+) True G183226
TU207820 lncRNA upstream 212156 74157076 ~ 74226257 (+) False G183177
TU207831 lncRNA upstream 260731 74173635 ~ 74177682 (+) True G183182
TU207811 lncRNA upstream 270407 74156622 ~ 74168006 (+) False G183177
TU207812 lncRNA upstream 270407 74157076 ~ 74168006 (+) False G183177
TU208046 lncRNA downstream 13850 74452538 ~ 74457151 (+) True G183354
TU208175 lncRNA downstream 292551 74731239 ~ 74732563 (+) True LOC110496107
TU208791 lncRNA downstream 314678 74753366 ~ 74753628 (+) True G184023
TU208824 lncRNA downstream 343271 74781959 ~ 74782190 (+) True G184055
TU208829 lncRNA downstream 346744 74785432 ~ 74785668 (+) True G184060
XM_021571706.2 mRNA upstream 216883 74210463 ~ 74221530 (+) False LOC110496053
XM_021571714.2 mRNA upstream 216883 74211135 ~ 74221530 (+) True LOC110496053
XM_021571668.2 mRNA upstream 239727 74178578 ~ 74198686 (+) False LOC110496029
XR_005037864.1 mRNA downstream 81088 74519776 ~ 74529598 (+) False LOC110496089
XR_005037863.1 mRNA downstream 81088 74519776 ~ 74529599 (+) False LOC110496089
XR_005037865.1 mRNA downstream 81088 74519776 ~ 74529599 (+) False LOC110496089
XR_005037866.1 mRNA downstream 81088 74519776 ~ 74529599 (+) True LOC110496089
XM_036955511.1 mRNA downstream 221671 74660359 ~ 74732682 (+) False LOC110496107
TU206688 other upstream 813895 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 828176 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 858338 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 1096136 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 90961 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 272893 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 447410 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 598564 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 647934 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile