RNA id: TU208054


Basic Information

Item Value
RNA id TU208054
length 5298
RNA type TUCP
GC content 0.52
exon number 2
gene id G183361
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74529649 ~ 74535026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTGTTATGGTTTATTATGATGTCGTCATGTCTTCATTATTGCACGCATCATGAGCTCTATTGCTTTGTGATTGGCCAGTCCAAAGAGGTCAGGGTTCACCTTGACTCCAGATTGTGGAGTAGGGTGAAATTGTCCCTAACCACTGATCTAGGGTCAGATACATTGTCATCCTCTAATGGTTACAGTTAGAATTgaggatctgatcctagatctgtgcttaTTGGAGCAACTTCTACCTCGACTCCGGAATGTTCTGGCCTGTTCCTTTAACATCTGGGAAACACTGGTTAATTCCAGTTTAGAATACGCTGTGAAAGCGAACACATTTGTTAACATTATTAAAGACCCCTTTGGACACACTTGGTACCATTAAAATTGACACTGATAATGGTAAAACACTGACTTAACATCACTGTTCTGTTGTACTGATCTACATTGCTAGTGAATGACCAGTCACTTTCATAGCCTATTATCATATGTACACATTACAATGCCTGTCATCTGTTGGTCAAGCTAAGTAGTAGTCTTTCAAAGGGAGTATGCctcatatctctccctctccatctcttccatcTCCTCAAGGCTCCTGTTGTGACAGCCCCATGTCCTTGGCTTGTATATGAGTCCGGCTCTGTTTCCGTGTGCTTGGCCTGTTGGAGTGGGCTCATAGAACCCTTCTTGGCATGATGTGTTGCAGTGGGCTCAGTATCTGTACAGAGCCTGTCTTAAGCTATCTTGGCTCAGACAAGTACACCAGCAAAGTTTCACAAGATGAGAGAAGGGAGACTGGCGTGGGTGacagagaaagatggggagacaAAGgctgggagtgagatggagaggtgggATGTGGAGAGAAGGGTTGGCTGAGAGAGGGCGTTTTCCACCAAGTCCCGTCATTAGagagccggtgtagtaagattgaatcctactacaccggctctgacgctcgtcggatgtggcagggcttgaaaactattatggactacaaagggaaacccagacgcgagctgcccagtgacgcgagcctaccagacaagctaaatgccttttacgctcgcttcgaggcaagcaacactgaagcatgcacgagagcaccagtgTTTTGGATGAATGTGTGATAAAGCTCgcggtagccaatgtgagcaagacctttattaaacaagtcaacattcacaaagccagatggacgtgtactcaaagcatacgcggaccaactggcaagtgtcttcactgacattttcaacctctaaatgactgagtctgtaatacctacatgtttcaaggagaccaccatagtccctgtgctcaaagaagagaaggtaacctgcctacatgattactgccctgtagcacactacgtcggtagccatgaagtgctttgaaaggctggtcatggctcacatcaacagcatcctcccagacaccctagacccactccaatttgcataccaccccaacagatccactgaTGCCTCAATCGCACTTCACATTGCCCTTTgccacctggataaaaggaacccctatgtgagaatgctgttcattgactacttatcagcgttcaacaccatagtgcccacaaagttcATCAGTAAGGACCGTGgtactaaacatctccctctgcaactggatcctggacttcctgacaggccgcccccaggtggtaagggtaggcaacaacacgtctgccacgctgatcctcaacactggggcccctcgggtgtgtacttagtctcctcctgtactccctgttcacccacgactgcgtggccaaacacgactccaacatcaccattaagtttgctgacgacacagtggtaggcctgatcaccgacaacattTAGCCAGCCTATaggtaggaggtcagagaactggcagtgtggtgccaggacaacaacctctccctcaatgacaAAGGAGCTGATGGAAAAAGGAAAAagcgggctgaacaggcccccattaacatcaacggggctgtcgTGGAGCAGGTCgtgagttccttggtgtccacatcaccaacaatctatcatagtccaaacacaccaagacagtagtgaagagggcacgacaaaaccttttccccctcaggagactgaaaagatttggtatgggtccccaaatcctcaaagttctacagctgcaccatcaatagcatcctgaccggttgaatcactgcctggtatggcaactgcttggcatctgaccataaggcactacagagggtagtgcgtacggcccagtacatcactggggccaagcttcatgTAATCctggacctatataataggcagtgtcagaggaaaacccataatattgtcagagactccagtcacccaagtcactgttttctctgctacagtacggcaagcggtaccggagcgccaagtctacccgctgtatatagcctcattattgttatgttattgtgtttttattatgttttactttagtttatttggtaaatattttcttaactcttcttgaactgcactgttggttaagggcttgtaaataaacatttcacggtaaggtctactgtGCACTTGTagtcagcgcatgtgacaaataaagtttgatttgaacttGTGTGAATCAACATCCCCCACCTCTGTTCTTCATGCTTGACTCCCCCATCCCACTCTATCAGAACAAAAGGAATTGTGAAAGTGGATGTTGCAGTGGTTTGCTATAGTGATGTGCAATGCGGGGAGGGAATAGGAGGGTCTAGTATCTGGTGGGTGCAAGGCTGGGGAGTGAATGCATAAGCCTAGGGACAACAAAGCCTCCCAATCTCTGAGCTGtatgtatgttagtgtgtgtctggGCTGAACAATACTGCTCTGCCTCCTGGGCCATGGGATGCTTTTACATAATCCAGGTCCTCTCGGCctgctgcaacacacacacaaacttcttTAGGTTCCGCTCAATCACAGAaacgctctctccctctttgtgtctgtctttcACTATTGCAAAGACTTTGGGGAAATTTTTGACAGGCTCACTGCGTCAGAGGTGCAACACCGGTTATTACACCCCAGGAAATCCTGTTAGCAGAGAGGGGTGTGGCCTCATTCTCCTGGACTCCACTTCCTTAATGTTTCACACTACGGAAAAGTGGGATGAAGAAAAGAAGACGAGGCGACCAGGATAGGAATCCTTTTGAGATGCATAAAAAATAACTTCCTCCCACCTGATTTTATATACACAATGAGACCGGGGGAGGCTATAGTAACACCGGGAGTAGGATGACTTTAACCACAGACACTGCTCTAAGGTCAGTTTTACATCTTTACCCctactggttaaggttaggattggtgGACTGTAAAcggatcctagatctgtgcctataaGGACAACCTCTACCTGGAGCATAAGCCTAGCAGACACACAGCGTATAGCGGTTAATAGAACATCACATGACTACAGGACACATTGACATGGGAGAACGCACTACCCATTGGTTTAAAGGATGCTGGGAAGATGTGTGTTCAGCTAGACTTGTTTGCAGCAAAGTCTTTTCTACAAACCGTGCTTGTGGAATGATTTCAAAGAATGTTTGTAAATGCTAAATTAAACATCAGTGACATTGCATCAACAATGTTTCTTTAATATTGACAGTTAAGACTTGGAAAGAGTCACTTTTAATGAACTACCTTGAGTTGTCACACTGATGCTAACGTTTGATGCGGAAATACCAGTTAAATAGAAACGTTGTTGTTGTACACACGTCTGTTACTATGGCCATAGTGGCTGTCCCATGGAATTAGAATGAGTAGAAGGAACATTCCAGTTCAAAACCACAGTCCATATTGGGTGGACTGGCTGCCATATTGGGAAAGTTCAATACATATTTGATACTATTCTGCTATAATAAGAGCAAATGTGTGATTCAACATACTATATGAATTAGAGACTACGTCCGTCCGTTCCAGCCATTCTATTCCTATGGGCTAGTCAACACTCACAGAGCTTCATCCACAGTCAGTCCACAGTAGTGGGAATCCTACTGGAGTTACATAATACTGTCAACATTGTGCTGTTCCAACCATCAGTaattatatatacaaatatacagataCAACATACAAATGCATACTGACTGGGTTATTACAATGAGACCTACAAAAAAAGCACAAGAGTAGAAAGTCTGTGGGCTATTGCAGGTGAGGCTGTTGCAGCCACTACTCGTACAGAACATCTGTTTTCAGacacacctaacacacacacacacacacacacacacacacacacactcctatcaCAACTCTAACCTCACAGGCCACATTGTGTGCAcgagtgttgcaaaataaatggacacatacagtatatattattcAATAATTTCGTACGCACCGCTCACGCGCTTGAACGAGCGTCTGCATAGCCAcacgctaaaatagaacttggttctatttgagaCGCTCCACGGACTGCAAGTCCCCTCCTTATTGAATATCAGGAAGATACAGACCCACGTGGATGCTTGACAAACACAGGAGGAGAGATTAATTAAATATAACAAAACTAAGTAGGTTTTCattttttatctgtggattaatcgTCAGAGTAGAGAAACAAGATTTTGTATGACTCCGGGTCAAAATGTTAAAGTTAGAAGACCATATGCATGTCAGGTAAAATATCAACCCAATGTGCATCTCCCAGGACTAACTAGCAGTctcaacagctagctagctaaatgtccatgaatgtttcgACCTGCctccaaattaatatagtttggttttgatatttcaacctgcatgtcacgatcgcgtctggtgtggatgtacaaaatcaacatgcgcgcaATGGCACATGCAGACGCACACACGTGGCCGGTGATGTCAGCATTACCTATCacaaccctaacacacacacacacaacacactcctatcacaaccctaacacacacaacacactccTATCACAACCCTAACACAGTTATAAATAAATTAACACAGCCTTTTAACAAAGCTATCAAAAACAAAGCGTCAAAAAATCCTCCTACAAattttctcttgttcttttgtatgtCTACAACAATGTTGATTccatgatatgtacagcactagaaaATAATTTAATCATAATGCACACTTTCTACAGACATGAAATGGTACTGTGCTAGTCCACGTGGtgggagaggggacaggggggCACAATGTGTGCCTATTGACTAAGTCTCTGGGGGGTGGGGATAGAGAGGTGAGTGGGTGGGGTCACAGAGAGGAAGTGGTGGAGTCAACAATTTCTCTCCCATTACACACAGTCGGTACATACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208046 lncRNA upstream 72498 74452538 ~ 74457151 (+) True G183354
TU208036 lncRNA upstream 90961 74438413 ~ 74438688 (+) True G183346
TU207904 lncRNA upstream 268479 74260373 ~ 74261170 (+) True G183226
TU207820 lncRNA upstream 303392 74157076 ~ 74226257 (+) False G183177
TU207831 lncRNA upstream 351967 74173635 ~ 74177682 (+) True G183182
TU208175 lncRNA downstream 196213 74731239 ~ 74732563 (+) True LOC110496107
TU208791 lncRNA downstream 218340 74753366 ~ 74753628 (+) True G184023
TU208824 lncRNA downstream 246933 74781959 ~ 74782190 (+) True G184055
TU208829 lncRNA downstream 250406 74785432 ~ 74785668 (+) True G184060
TU208841 lncRNA downstream 257380 74792406 ~ 74792739 (+) True G184072
XR_005037863.1 mRNA upstream 50 74519776 ~ 74529599 (+) False LOC110496089
XR_005037865.1 mRNA upstream 50 74519776 ~ 74529599 (+) False LOC110496089
XR_005037866.1 mRNA upstream 50 74519776 ~ 74529599 (+) True LOC110496089
XR_005037864.1 mRNA upstream 51 74519776 ~ 74529598 (+) False LOC110496089
XM_021571706.2 mRNA upstream 308119 74210463 ~ 74221530 (+) False LOC110496053
XM_036955511.1 mRNA downstream 125333 74660359 ~ 74732682 (+) False LOC110496107
XM_036955512.1 mRNA downstream 125337 74660363 ~ 74732682 (+) False LOC110496107
XM_021571821.2 mRNA downstream 293241 74828267 ~ 74890826 (+) False LOC110496116
XM_036955513.1 mRNA downstream 375441 74910467 ~ 74962990 (+) False LOC110496126
XM_036955514.1 mRNA downstream 375441 74910467 ~ 74962990 (+) False LOC110496126
TU206688 other upstream 905131 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 919412 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 949574 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 1187372 73341380 ~ 73342277 (+) False G181995
TU206531 other upstream 1187372 73341707 ~ 73342277 (+) True G181995
TU208178 other downstream 176555 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 351072 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 502226 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 551596 75086622 ~ 75087407 (+) False LOC110496136
TU210196 other downstream 1632631 76167657 ~ 76169295 (+) False LOC110496459

Expression Profile