RNA id: TU208774


Basic Information

Item Value
RNA id TU208774
length 1102
RNA type TUCP
GC content 0.48
exon number 3
gene id G184006
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74730872 ~ 74732637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctccatactcATTCAGGATTATAAGGCAAGAGTTTATTTAAATAACTTTTAGACAATACCAAAATACACCTACAAAAACAGAAACATTCACTTTGTACAAAAATATGATTCTTTGTTCATTCCAGACATAATACCTGATTATTATAGTAGCAGTAGAATAGGTCATAGCTAAGCTTATCTAGAGCATGCAGTTTCTCCTGTACATGTTATAGAAGTATTTACAGTCATTCAACATGAATGCATCTGattaacacacacactactgacctATGGGCCACATCTCAATAGGATCAAATagggtcatggctagaagggatgcAGCGAAGTTCAGTGACATCACACACTTGTTGTGAACTCAGACCATACTGGCATAGCCAtgtcacccatgatacaagtcagtattcaacatcCATCCAAGTCTGAGGACGACGcgagatgacgtggaaactggCCGCTAGGGACAACAGGGAACACTGGTTTTGCTAGGGTGCTGTGGACGGGAATGGTGGATAAGCATCTGCCTCAGATTGAAAGTTCAAATCTAGCAATAGAAAGtaatttttgttttaagTCTAACTACTTGTTTGATCATCTTACCCATGGCCCCCCTTTACCACTATAAACATTGATGGGTTCCCCTAATGACACTTTTTGTGACTGCTGTTCTCACTCCTCCTTTTTGGTATCCTCACCAgctcatcctctcctctgtctcactaccctctctccatccatctctttatccctctctccattcctctctccatgGTGTCGCCTgttcctgcttttcttcagctcCTGGATGTGTTTCCATTTCCCCACCCCCtgccctcttccacctctcctatTGGCCGGCCTCTTCTCCAGCCAAAGCGAATCACAGTACTCCTCCAGCGAGCCAATGGGAGAACTCATCACACGCAGGTAGTCCTTATAGCGCTGACGATGCCCGTACGAAATGAGGCGCAGCGTGAGGCGGAGCagagtgtgtgtgaagtgtgtgtgctcCTGTGCCATACACACGTACATGCCGGCATCGGCAGGATGGAGAGAGCGAATGAGGAGACCTTGGCCTGTATGGACCACTCTGTCATCTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208730 lncRNA downstream 62405 74666945 ~ 74668467 (-) True G183969
TU208588 lncRNA downstream 136452 74568960 ~ 74594420 (-) True LOC110496093
TU208662 lncRNA downstream 166218 74563922 ~ 74564654 (-) False G183903
TU208661 lncRNA downstream 166218 74564169 ~ 74564654 (-) True G183903
TU208511 lncRNA downstream 279478 74450963 ~ 74451394 (-) True G183757
TU208780 lncRNA upstream 6058 74738695 ~ 74739381 (-) True G184012
TU208793 lncRNA upstream 21090 74753727 ~ 74754012 (-) True G184025
TU209291 lncRNA upstream 276467 75009104 ~ 75037526 (-) False G184488
TU209289 lncRNA upstream 287188 75019825 ~ 75032517 (-) False G184488
TU209285 lncRNA upstream 302827 75035464 ~ 75048734 (-) True G184488
XM_021571790.2 mRNA downstream 136446 74533285 ~ 74594426 (-) False LOC110496093
XR_005034539.1 mRNA downstream 222767 74501414 ~ 74508105 (-) True LOC118937295
XM_021571746.2 mRNA downstream 257556 74452532 ~ 74473316 (-) True LOC110496063
XM_036955509.1 mRNA downstream 257570 74452532 ~ 74473302 (-) False LOC110496063
XM_021571768.2 mRNA downstream 257572 74452532 ~ 74473300 (-) False LOC110496063
XM_021571925.2 mRNA upstream 623934 75356571 ~ 75361242 (-) True LOC110496174
XR_005037884.1 mRNA upstream 846213 75578850 ~ 75582017 (-) True LOC110501959
XR_005037885.1 mRNA upstream 851920 75584557 ~ 75585136 (-) True LOC118936395
XM_021571935.2 mRNA upstream 862729 75595366 ~ 75605880 (-) False LOC110496186
XM_036955575.1 mRNA upstream 862729 75595366 ~ 75607735 (-) False LOC110496186
TU208238 other downstream 620081 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 737327 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 1054449 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 1385025 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 1652493 73076027 ~ 73078379 (-) True LOC110495704
TU210008 other upstream 873590 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1144722 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1252522 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 1360533 76093170 ~ 76099850 (-) True adm2b
TU211216 other upstream 1540887 76273524 ~ 76293392 (-) False G186197

Expression Profile