RNA id: TU208791


Basic Information

Item Value
RNA id TU208791
length 263
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G184023
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74753366 ~ 74753628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcctagagagaggatctatctacagctatgcatttggtctgtcatccagggttttaaccaataCCAGTCTTGCTCagctttgatatttgtcactgactgtTACCAATGTTCTATTGTGAGAATGACTATTGAGAAGTCTCCACTTAATAAATTCGCTGCTGCTTTCAatgtcattccaaagggtaggtttaacagagcaaatggaacCATATATCATCAACAATGCTATTCAGGTCTGTATAGCATTTGGGAAGTCATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208175 lncRNA upstream 20803 74731239 ~ 74732563 (+) True LOC110496107
TU208046 lncRNA upstream 296215 74452538 ~ 74457151 (+) True G183354
TU208036 lncRNA upstream 314678 74438413 ~ 74438688 (+) True G183346
TU207904 lncRNA upstream 492196 74260373 ~ 74261170 (+) True G183226
TU207831 lncRNA upstream 575684 74173635 ~ 74177682 (+) True G183182
TU208824 lncRNA downstream 28331 74781959 ~ 74782190 (+) True G184055
TU208829 lncRNA downstream 31804 74785432 ~ 74785668 (+) True G184060
TU208841 lncRNA downstream 38778 74792406 ~ 74792739 (+) True G184072
TU208844 lncRNA downstream 49967 74803595 ~ 74803814 (+) True G184075
TU208893 lncRNA downstream 125018 74878646 ~ 74881118 (+) True G184122
XM_036955511.1 mRNA upstream 20684 74660359 ~ 74732682 (+) False LOC110496107
XM_036955512.1 mRNA upstream 20684 74660363 ~ 74732682 (+) False LOC110496107
XR_005037863.1 mRNA upstream 223767 74519776 ~ 74529599 (+) False LOC110496089
XR_005037865.1 mRNA upstream 223767 74519776 ~ 74529599 (+) False LOC110496089
XR_005037866.1 mRNA upstream 223767 74519776 ~ 74529599 (+) True LOC110496089
XM_021571821.2 mRNA downstream 74639 74828267 ~ 74890826 (+) False LOC110496116
XM_036955513.1 mRNA downstream 156839 74910467 ~ 74962990 (+) False LOC110496126
XM_036955514.1 mRNA downstream 156839 74910467 ~ 74962990 (+) False LOC110496126
XM_036955515.1 mRNA downstream 156839 74910467 ~ 74962990 (+) False LOC110496126
XM_036955516.1 mRNA downstream 156839 74910467 ~ 74962990 (+) True LOC110496126
TU208178 other upstream 39252 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 218340 74529649 ~ 74535026 (+) True G183361
TU206688 other upstream 1128848 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 1143129 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 1173291 73576765 ~ 73580075 (+) True LOC110501876
TU208835 other downstream 132470 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 283624 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 332994 75086622 ~ 75087407 (+) False LOC110496136
TU210196 other downstream 1414029 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 1414029 76167657 ~ 76169295 (+) True LOC110496459

Expression Profile