RNA id: TU208893



Basic Information


Item Value
RNA id TU208893
length 928
lncRNA type intronic
GC content 0.35
exon number 2
gene id G184122
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74878646 ~ 74881118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATATTGTACTATTGAAAAGCCcatttctatttttattagaGATATTTCTTGTcatcaaaacatcacctaaacataacccaacACTTGCATTCGCCATAACTGTTTCTCAGGTCTACATCATAACTCTTCTTATCAGGATTTTCGTTACAATCTTCATTAAAAAAACAGTCTAATATTGAGATGGGATACAACCTAGCCTCCCTAAACATCAAATGGTCTCATCAAATATAAATTCCCCACAAATAAAAGATCCAGATTCGTCCACTTGTTCTGTAGACATGAATTCAGTCCTCCACGGGTCAGAACCTGGAATCGGCCCATACCGCACCATCTATTGTCATAGATTTCTCCAGAGTCCTGGAAATAAGGCCTCATACACAGGGAATTAGACAACAGCCCCCTAAAACTAAAACAGTCACACAGGTGAATGTAGCCCATAACACAGTGATCATAACATTTTTCCATTTTCCAAACGTACTATCAAACCCAATCAGTCAGAGAAGTATCCACCCCAGAGTTTTCTGCCAAACCGTGAGCCAGGGTGGTCAAACCAGCTGAGGCTTCGGGCACTGATTCATCCGGagctgtgtcatttgggatgtaagCACAAACATGGTCCTGATAATCACGCATACTTCTCCCTTTTCAGCCATTAACATATCTAATGCAATTCTATTCTGCCAAGCCATCCAGCTGGTTGCTTCAGTCTGTTCTGCAAAACCTTTAATAGCATCTCTGGtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacagttattggatatttcaaacttttttaacaaatcaaaaactgaaaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208844 lncRNA upstream 74832 74803595 ~ 74803814 (+) True G184075
TU208841 lncRNA upstream 85907 74792406 ~ 74792739 (+) True G184072
TU208829 lncRNA upstream 92978 74785432 ~ 74785668 (+) True G184060
TU208824 lncRNA upstream 96456 74781959 ~ 74782190 (+) True G184055
TU208791 lncRNA upstream 125018 74753366 ~ 74753628 (+) True G184023
TU209125 lncRNA downstream 137985 75019103 ~ 75034943 (+) True G184332
TU209128 lncRNA downstream 158647 75039765 ~ 75045926 (+) True G184335
TU209134 lncRNA downstream 175879 75056997 ~ 75057785 (+) True G184341
TU209151 lncRNA downstream 198814 75079932 ~ 75080163 (+) True G184358
TU209152 lncRNA downstream 200703 75081821 ~ 75082029 (+) True G184359
XM_036955511.1 mRNA upstream 145964 74660359 ~ 74732682 (+) False LOC110496107
XM_036955512.1 mRNA upstream 145964 74660363 ~ 74732682 (+) False LOC110496107
XR_005037863.1 mRNA upstream 349047 74519776 ~ 74529599 (+) False LOC110496089
XM_036955513.1 mRNA downstream 29349 74910467 ~ 74962990 (+) False LOC110496126
XM_036955514.1 mRNA downstream 29349 74910467 ~ 74962990 (+) False LOC110496126
XM_036955515.1 mRNA downstream 29349 74910467 ~ 74962990 (+) False LOC110496126
XM_036955516.1 mRNA downstream 29349 74910467 ~ 74962990 (+) True LOC110496126
XM_036934200.1 mRNA downstream 90120 74971238 ~ 74988691 (+) True LOC118936821
TU208178 other upstream 164532 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 343620 74529649 ~ 74535026 (+) True G183361
TU206688 other upstream 1254128 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 1268409 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 1298571 73576765 ~ 73580075 (+) True LOC110501876
TU208835 other downstream 4980 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 156134 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 205504 75086622 ~ 75087407 (+) False LOC110496136
TU210196 other downstream 1286539 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 1286539 76167657 ~ 76169295 (+) True LOC110496459

Expression Profile