RNA id: TU209128



Basic Information


Item Value
RNA id TU209128
length 790
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G184335
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75039765 ~ 75045926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCATAACGAGGCCACCAATCCCTTTTGCGAGGCATGCCCTTAGCGTGAAGAGAAGCTCACTCAGTAAAAACTTCCAAACAGTCAAAACCATCTGGTTTTGAGATGGGGGTGAAATCCAAAGTTGTGCTACATATTCATTGGCTTTGCCACAGCAATTCTTTTTTACAGTCAATATTAATACATGACTAGCTCAAACACTTAATCTGCAATAATTCCAAGTTAATCAGTGGGTGATGTTGATTTCAGAACCAAAGTGGAGGGACAAAAAACATGCTTCATTGCCCcgctgatagtggtagtggggtggtatatgcctagtctcccttatggctgaGGTCAGATGCCTTCATAGTACATAGAACATAGGTATACAGAATTTAAAAacacttgcacgcacacacacacacacactctccctctcacacacacacacacacaaacacgcacacacacacacacacacacacacgcacgcacgcacgcacacacacacacacagagagagagagaggagtctgcTTCGACAGAGCCCAGCATTACATCAGCAGACAATTTGAATTTAGAATTTAAAATGAATGTGTGTATGCAACAATTGTTAACTCATTGAATCTTTTCCAGCGAACCCAATTGCATCAAATTGTTTCAAACTAAAATGTATCTCATCGGAGCCCATGTGTCTAGCTAGATACCTATCGAATATGCATCAGGCTTTAAAATTTAGGTTCACAAACAATGAGAGGAAAAACCATGAGGATTTTAGGTCTATGAAGACACTCTATATAGATGTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209125 lncRNA upstream 4822 75019103 ~ 75034943 (+) True G184332
TU208893 lncRNA upstream 158647 74878646 ~ 74881118 (+) True G184122
TU208844 lncRNA upstream 235951 74803595 ~ 74803814 (+) True G184075
TU208841 lncRNA upstream 247026 74792406 ~ 74792739 (+) True G184072
TU208829 lncRNA upstream 254097 74785432 ~ 74785668 (+) True G184060
TU209134 lncRNA downstream 11071 75056997 ~ 75057785 (+) True G184341
TU209151 lncRNA downstream 34006 75079932 ~ 75080163 (+) True G184358
TU209152 lncRNA downstream 35895 75081821 ~ 75082029 (+) True G184359
TU209153 lncRNA downstream 36481 75082407 ~ 75082650 (+) True G184360
TU209154 lncRNA downstream 37552 75083478 ~ 75083777 (+) True G184361
XM_036934200.1 mRNA upstream 51074 74971238 ~ 74988691 (+) True LOC118936821
XM_036955513.1 mRNA upstream 76775 74910467 ~ 74962990 (+) False LOC110496126
XM_036955531.1 mRNA downstream 96076 75142002 ~ 75256839 (+) False LOC110501950
XM_036955521.1 mRNA downstream 101247 75147173 ~ 75256839 (+) False LOC110501950
XM_036955523.1 mRNA downstream 101247 75147173 ~ 75256839 (+) False LOC110501950
XM_036955525.1 mRNA downstream 101247 75147173 ~ 75256839 (+) False LOC110501950
XM_036955529.1 mRNA downstream 101247 75147173 ~ 75256839 (+) False LOC110501950
TU208835 other upstream 153265 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 325651 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 504739 74529649 ~ 74535026 (+) True G183361
TU206688 other upstream 1415247 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 1429528 73606892 ~ 73610237 (+) True G182139
TU209106 other downstream 40696 75086622 ~ 75087407 (+) False LOC110496136
TU210196 other downstream 1121731 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 1121731 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 1387891 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 1488452 76534378 ~ 76606975 (+) True G185549

Expression Profile