RNA id: TU209307



Basic Information


Item Value
RNA id TU209307
length 271
lncRNA type intronic
GC content 0.51
exon number 1
gene id G184501
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75052966 ~ 75053236 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caataatctccttagtcttggttacgttcaGGGATATGTTGTTATTCtagcaccacccggccaggtctctgacttcctccctataggctgtctcgtcgttgtcggtgatgaggcctaccactgttgtgtcgtctgcaaacgtaatgatggtgttggagtcatgcctggccatgcagtcgtgggtgaacagggagtacaggaggggactgagcacacacccatgGGGAGCtccagtattgaggatcagcatggcagatgtgttgctacctac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209305 lncRNA downstream 858 75051862 ~ 75052108 (-) True G184499
TU209304 lncRNA downstream 1454 75051304 ~ 75051512 (-) True G184498
TU209303 lncRNA downstream 2906 75049853 ~ 75050060 (-) True G184497
TU209285 lncRNA downstream 4232 75035464 ~ 75048734 (-) True G184488
TU209299 lncRNA downstream 9112 75038281 ~ 75043854 (-) True G184493
TU209312 lncRNA upstream 7583 75060819 ~ 75069840 (-) True G184506
TU209317 lncRNA upstream 17062 75070298 ~ 75070515 (-) True G184511
TU209318 lncRNA upstream 19598 75072834 ~ 75073131 (-) True G184512
TU209325 lncRNA upstream 29580 75082816 ~ 75083035 (-) True G184519
TU209329 lncRNA upstream 35647 75088883 ~ 75089196 (-) True G184523
XM_021571790.2 mRNA downstream 458540 74533285 ~ 74594426 (-) False LOC110496093
XR_005034539.1 mRNA downstream 544861 74501414 ~ 74508105 (-) True LOC118937295
XM_021571746.2 mRNA downstream 579650 74452532 ~ 74473316 (-) True LOC110496063
XM_036955509.1 mRNA downstream 579664 74452532 ~ 74473302 (-) False LOC110496063
XM_036955510.1 mRNA downstream 579666 74452532 ~ 74473300 (-) False LOC110496063
XM_021571925.2 mRNA upstream 303335 75356571 ~ 75361242 (-) True LOC110496174
XR_005037884.1 mRNA upstream 525614 75578850 ~ 75582017 (-) True LOC110501959
XR_005037885.1 mRNA upstream 531321 75584557 ~ 75585136 (-) True LOC118936395
XM_021571935.2 mRNA upstream 542130 75595366 ~ 75605880 (-) False LOC110496186
XM_036955575.1 mRNA upstream 542130 75595366 ~ 75607735 (-) False LOC110496186
TU208774 other downstream 320329 74730872 ~ 74732637 (-) True G184006
TU208238 other downstream 942175 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 1059421 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 1376543 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 1707119 73344950 ~ 73345847 (-) True G182708
TU210008 other upstream 552991 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 824123 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 931923 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 1039934 76093170 ~ 76099850 (-) True adm2b
TU211216 other upstream 1220288 76273524 ~ 76293392 (-) False G186197

Expression Profile