RNA id: TU209134



Basic Information


Item Value
RNA id TU209134
length 789
lncRNA type intronic
GC content 0.38
exon number 1
gene id G184341
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75056997 ~ 75057785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAATATACAGCCTCAAACACAACCCACCGGCCTTTTGTTCAAGTCACCTCACAGATGGCATGATATCAGATGTAAATCTCCAGTATTTTTGCATGCCCTTTGCCAGGGGACTTGGTTGGCACACTGTGTGCTTCTTAACAGAGTAATGCAACCAAGCTATTGATATTGTTGTGATAATGCtgacaagtttaaaaaaaaatagtataTGCTTGGTTACAGCAGCAGTGTGTTGGTTTATAGGCTCTCTGGTTTACAGGCTTACAGGTTTACAGGCTCTCTGGTTTACAGGCTTACGGGTTTACAGGCTCTCTGGTTTACAGGCTTACAGGTTTACAGGCTCTCTGGTTTCATATTTGTTTTAAAGAGAATTCTTTGCTGCTTTGCACACCTGAGTTATTTGATATCATTGACTATGCTGTAGTTGAATACGATTGATGTGGCGGGATATAGAATTGTGTGGCTTTTTCTCTGAGACGTGCTATCACATTGCatctacattgaacaaaaatataaacacagcatGTTGGACACATGTTTTtccacaaaagcttatttctatcaaatgttgtgcacaaatgtatttacacccctgttagtgggcatttttcctttgccaagataatccattcacctgacagatgtggcatatcaagaagctgattaaacagcatgattattacacaggtgcaccttgtgttggggacaataaaaggatcaccaacccctcttttacactgctgctactctctgtttatcatatatgcatagtcactttaactatacattca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209128 lncRNA upstream 11071 75039765 ~ 75045926 (+) True G184335
TU209125 lncRNA upstream 22054 75019103 ~ 75034943 (+) True G184332
TU208893 lncRNA upstream 175879 74878646 ~ 74881118 (+) True G184122
TU208844 lncRNA upstream 253183 74803595 ~ 74803814 (+) True G184075
TU208841 lncRNA upstream 264258 74792406 ~ 74792739 (+) True G184072
TU209151 lncRNA downstream 22147 75079932 ~ 75080163 (+) True G184358
TU209152 lncRNA downstream 24036 75081821 ~ 75082029 (+) True G184359
TU209153 lncRNA downstream 24622 75082407 ~ 75082650 (+) True G184360
TU209154 lncRNA downstream 25693 75083478 ~ 75083777 (+) True G184361
TU209158 lncRNA downstream 31117 75088902 ~ 75089146 (+) True G184365
XM_036934200.1 mRNA upstream 68306 74971238 ~ 74988691 (+) True LOC118936821
XM_036955513.1 mRNA upstream 94007 74910467 ~ 74962990 (+) False LOC110496126
XM_036955531.1 mRNA downstream 84217 75142002 ~ 75256839 (+) False LOC110501950
XM_036955521.1 mRNA downstream 89388 75147173 ~ 75256839 (+) False LOC110501950
XM_036955523.1 mRNA downstream 89388 75147173 ~ 75256839 (+) False LOC110501950
XM_036955525.1 mRNA downstream 89388 75147173 ~ 75256839 (+) False LOC110501950
XM_036955529.1 mRNA downstream 89388 75147173 ~ 75256839 (+) False LOC110501950
TU209105 other upstream 15907 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 170497 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 342883 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 521971 74529649 ~ 74535026 (+) True G183361
TU206688 other upstream 1432479 73622536 ~ 73624518 (+) True G182144
TU209106 other downstream 28837 75086622 ~ 75087407 (+) False LOC110496136
TU210196 other downstream 1109872 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 1109872 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 1376032 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 1476593 76534378 ~ 76606975 (+) True G185549

Expression Profile