RNA id: TU209318



Basic Information


Item Value
RNA id TU209318
length 298
lncRNA type intronic
GC content 0.37
exon number 1
gene id G184512
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75072834 ~ 75073131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggtatgatagtggggggtgttcatagacacaacaaaggccttaaaaatgtccacaatcttctcggccacatgtcattagtacacctaaatacagttcacataacaatgcataacttgcaagcaacctcccttttaactaaaatgtccacccaaatacttctggcagggcaataatagtccagctctaatgaacttacatgggaagtgcattggaaaaatagagagtctgttgcagggtaaagcactggaacgatagaggggagagaaaaagagaaagagaacaagagggaTCTTAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209317 lncRNA downstream 2319 75070298 ~ 75070515 (-) True G184511
TU209312 lncRNA downstream 2994 75060819 ~ 75069840 (-) True G184506
TU209307 lncRNA downstream 19598 75052966 ~ 75053236 (-) True G184501
TU209305 lncRNA downstream 20726 75051862 ~ 75052108 (-) True G184499
TU209304 lncRNA downstream 21322 75051304 ~ 75051512 (-) True G184498
TU209325 lncRNA upstream 9685 75082816 ~ 75083035 (-) True G184519
TU209329 lncRNA upstream 15752 75088883 ~ 75089196 (-) True G184523
TU209345 lncRNA upstream 42575 75115706 ~ 75116072 (-) True G184539
TU209348 lncRNA upstream 47085 75120216 ~ 75120495 (-) True G184542
TU209349 lncRNA upstream 49625 75122756 ~ 75123025 (-) True G184543
XM_021571790.2 mRNA downstream 478408 74533285 ~ 74594426 (-) False LOC110496093
XR_005034539.1 mRNA downstream 564729 74501414 ~ 74508105 (-) True LOC118937295
XM_021571746.2 mRNA downstream 599518 74452532 ~ 74473316 (-) True LOC110496063
XM_036955509.1 mRNA downstream 599532 74452532 ~ 74473302 (-) False LOC110496063
XM_036955510.1 mRNA downstream 599534 74452532 ~ 74473300 (-) False LOC110496063
XM_021571925.2 mRNA upstream 283440 75356571 ~ 75361242 (-) True LOC110496174
XR_005037884.1 mRNA upstream 505719 75578850 ~ 75582017 (-) True LOC110501959
XR_005037885.1 mRNA upstream 511426 75584557 ~ 75585136 (-) True LOC118936395
XM_021571935.2 mRNA upstream 522235 75595366 ~ 75605880 (-) False LOC110496186
XM_036955575.1 mRNA upstream 522235 75595366 ~ 75607735 (-) False LOC110496186
TU208774 other downstream 340197 74730872 ~ 74732637 (-) True G184006
TU208238 other downstream 962043 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 1079289 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 1396411 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 1726987 73344950 ~ 73345847 (-) True G182708
TU210008 other upstream 533096 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 804228 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 912028 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 1020039 76093170 ~ 76099850 (-) True adm2b
TU211216 other upstream 1200393 76273524 ~ 76293392 (-) False G186197

Expression Profile