RNA id: TU209179


Basic Information

Item Value
RNA id TU209179
length 234
lncRNA type intronic
GC content 0.43
exon number 1
gene id G184386
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75131145 ~ 75131378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtatataacaaagtattgagataaacttttgttattgaccaaatacttattttccagcataatttgcaaataaattcattaaaaatcctacaatgtgattttctggattttttttctcattttgtctctcatagttgaagtgatgaaaatgatgatgatgaaaattacatcaAAATTacatcatctttttaagtaggagaacttgcacaattggtggctaactaaatactttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209177 lncRNA upstream 1403 75129534 ~ 75129742 (+) True G184384
TU209169 lncRNA upstream 9731 75121174 ~ 75121414 (+) True G184376
TU209158 lncRNA upstream 41999 75088902 ~ 75089146 (+) True G184365
TU209154 lncRNA upstream 47368 75083478 ~ 75083777 (+) True G184361
TU209153 lncRNA upstream 48495 75082407 ~ 75082650 (+) True G184360
TU209180 lncRNA downstream 538 75131916 ~ 75132123 (+) True G184387
TU209085 lncRNA downstream 11301 75142679 ~ 75145608 (+) True LOC110496136
TU209214 lncRNA downstream 63351 75194729 ~ 75195520 (+) True G184421
TU209228 lncRNA downstream 86949 75218327 ~ 75218871 (+) True G184435
TU209503 lncRNA downstream 198038 75329416 ~ 75329742 (+) True G184689
XM_036934200.1 mRNA upstream 142454 74971238 ~ 74988691 (+) True LOC118936821
XM_036955513.1 mRNA upstream 168155 74910467 ~ 74962990 (+) False LOC110496126
XM_036955531.1 mRNA downstream 10624 75142002 ~ 75256839 (+) False LOC110501950
XM_036955521.1 mRNA downstream 15795 75147173 ~ 75256839 (+) False LOC110501950
XM_036955523.1 mRNA downstream 15795 75147173 ~ 75256839 (+) False LOC110501950
XM_036955525.1 mRNA downstream 15795 75147173 ~ 75256839 (+) False LOC110501950
XM_036955529.1 mRNA downstream 15795 75147173 ~ 75256839 (+) False LOC110501950
TU209106 other upstream 43738 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 90055 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 244645 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 417031 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 596119 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 1036279 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 1036279 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 1302439 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 1403000 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 1699035 76830413 ~ 76832500 (+) True G185718

Expression Profile