RNA id: TU209858



Basic Information


Item Value
RNA id TU209858
length 263
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G185013
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75435094 ~ 75435356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtttttggaaccaGTGAAtgttcagtcttcccagcctggtgcaggtctacaattttatttctggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttattccgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggaacctcttaaagaagaagttacaagtctgtgagagccagaaatcttgcttgtttgtaggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209854 lncRNA downstream 4004 75430888 ~ 75431090 (-) True G185009
TU209589 lncRNA downstream 35300 75399594 ~ 75399794 (-) True G184774
TU209586 lncRNA downstream 38197 75396428 ~ 75396897 (-) True G184771
TU209584 lncRNA downstream 39218 75395596 ~ 75395876 (-) True G184769
TU209572 lncRNA downstream 48579 75386290 ~ 75386515 (-) True G184757
TU209859 lncRNA upstream 77 75435433 ~ 75435638 (-) True G185014
TU209866 lncRNA upstream 8029 75443385 ~ 75443627 (-) True G185021
TU209869 lncRNA upstream 12896 75448252 ~ 75448571 (-) True G185023
TU209879 lncRNA upstream 20508 75455864 ~ 75461524 (-) True G185033
TU209880 lncRNA upstream 20965 75456321 ~ 75461860 (-) True G185034
XM_021571925.2 mRNA downstream 73852 75356571 ~ 75361242 (-) True LOC110496174
XM_021571790.2 mRNA downstream 840668 74533285 ~ 74594426 (-) False LOC110496093
XR_005034539.1 mRNA downstream 926989 74501414 ~ 74508105 (-) True LOC118937295
XM_021571746.2 mRNA downstream 961778 74452532 ~ 74473316 (-) True LOC110496063
XM_036955509.1 mRNA downstream 961792 74452532 ~ 74473302 (-) False LOC110496063
XR_005037884.1 mRNA upstream 143494 75578850 ~ 75582017 (-) True LOC110501959
XR_005037885.1 mRNA upstream 149201 75584557 ~ 75585136 (-) True LOC118936395
XM_021571935.2 mRNA upstream 160010 75595366 ~ 75605880 (-) False LOC110496186
XM_036955575.1 mRNA upstream 160010 75595366 ~ 75607735 (-) False LOC110496186
XM_021571963.2 mRNA upstream 208985 75644341 ~ 75656164 (-) False LOC110496199
TU208774 other downstream 702457 74730872 ~ 74732637 (-) True G184006
TU208238 other downstream 1324303 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 1441549 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 1758671 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 2089247 73344950 ~ 73345847 (-) True G182708
TU210008 other upstream 170871 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 442003 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 549803 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 657814 76093170 ~ 76099850 (-) True adm2b
TU211216 other upstream 838168 76273524 ~ 76293392 (-) False G186197

Expression Profile