RNA id: TCONS_00029739


Basic Information

Item Value
RNA id TCONS_00029739
length 1946
lncRNA type inter_gene
GC content 0.53
exon number 8
gene id XLOC_014349
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47907150 ~ 47917554 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATTCATATGAAGAAATGTATTGTTTACTTTTTCACCTGTCCTCAAGGTCTGCCAAGTACCAGGCTTGTATTTTAGAATCCACTACTCCTCCAGATCAAACCACAGCACCCCAGCAGGACACAAGCCCTCCACCAGAATCATCTCTGGAGAACCAGACCTCCATCACACCAGACCCAGCCTCCAGCACACACCAAGATGGTCCCGCTAATGATGGAGAAGCTCAGGTACATGGTGAAATAATCACTGACAAACCCAATCCTGAGGATGAAGAGAAGAACAGTCCCATTGAGGAGAAAACAACTGAGGGACATCCAGAGCAAGAAGAGCAGCAGGTCTCGGTGGATGCAGCCCAGACTGAACCTCAGGTGCTCAAACCTCGGAAGGATAAACTGGCCAGATTGAGGGAGCTTGGTCTGGATCCTCCTCCTGTGGTGAAGTTGTCCGCAGATGAAGGGGCTTTTGTCCAGTTGGAGGCGCCTCAGGAAAACCAAGCTCTGAAAGCACTACAGGAGCGCTTCATGAAGCACTTCCAGCCCGCACCTCGTCCCAAACGCGAGCGCACATTACAGCTTAATGTGGTGAGGAAAGACAGCAGTTCATCAGGACAGGAGGAGCTGCACTCTGAATCCATCACAATCACTGTCAAGGAGGGAGAAGATGAGCCAGCCAATGTCAAACCAGGTGAGAAACTGGTGCTGTTGAAGTCTCGTTTGCAGCAAGCCATGGCCATCCGCAGGAAAGAGGAGCGAGAGAGAAGAGCTGCTCTTCATCGCCTCGATAATGAAGActgtgaggaagaggaggaagaagagatGACCGAGTCAGAGGATGAAGAGGGTGTTGATGAATTGCTGGGAGATGGTAATGGTGATGATGAGGAAGAAGAGGAAGCGATAGACAGAGAGGAAGCAGAAGATGAAGTTTCTGTGAAAACCTGCCCATCTCCAGGCTTCAAGAGTCCGTCTCCGACTCCAGCAGACACTGACGGCACATTGATGCTGTTTGCTGGAAGCTCCTGTTCCCGCACAGGGGATGGTGTGAGAAGAATAGGAGCAGCTGGCCATGAAGCTGACAATAAAATGGAGGAGGACGACACGCTTTCGTTGGCTAAGGACAGCAGTCATAACAGTAGCTTTGAGCTGATGGGCTCCATGATCACCTCGTATCAGCCGAACAGAGCTGCAAGTCGAGGCCTGTCCAGCAGTGCTTTCCGCTCCCCGTCTCCCTGCCTCTTTAGATCCAGCTTTCTGGGCTCGGCCTCAAAGAGCTCTGGTAAGATGTCCGAGCCGTCCCTGTCTCTGCCTGTGGAGGATTCCCAGGACCTCTATGCTCCGTCATCCCCCAGTGAATCTGCTCTCCCTCCGGCTGGAGACTCTCAGGGACGCTTCTCCCTGGAGGACGACACTCAATCACAACTACTGGACGCAGACGGATTCCTGAATGTGGGTCCTCGCGGCGGTCCCTCACGCTCGCACAAACGCCAGCTCATACTCGACAGCCTGGATGAAAACGCTATGGATGCTAACATGGGAGAGCTTCTGGGGCTTTGCTCGGGGGGCTTCGGCACGGGGCAGACCCAGCCCGGAGACTCTCAGCCTGGGGCAGAGGATGAGCTGCTGGGGTTGTGCTCTGGAGCTTTTACCACACAGCCTGGAgagcctgctgctgctgctgttgttgatcTCAGGGAGAAAAACAACACTTCAGAGGCAGAAGAGCAGAGAGAGGAGAGCCGTGGAGGATCTGAGGCGGATATGGACCAGCTGCTGGCGCTCTGCTCCGGAAAGTTCACAGGAAGCCCATCTGCTTCGTCACTAAGATCAGTCTCCAGTCCTGCCTTTGAAAAGACGTCTGAAACAAACAGGTACTAAACTAAATTCATCAACTTGTAAATGCGTTTTCCTAATGTGTTATTGGATTTGTCTAAACCAAAAAATGTTGG

Function

GO:

id name namespace
GO:1903371 regulation of endoplasmic reticulum tubular network organization biological_process
GO:0022402 cell cycle process biological_process
GO:1903373 positive regulation of endoplasmic reticulum tubular network organization biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006996 organelle organization biological_process
GO:0006997 nucleus organization biological_process
GO:0007049 cell cycle biological_process
GO:0010256 endomembrane system organization biological_process
GO:0006259 DNA metabolic process biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0071786 endoplasmic reticulum tubular network organization biological_process
GO:0098826 endoplasmic reticulum tubular network membrane cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028472 lncRNA upstream 63498 47838603 ~ 47843652 (+) True XLOC_014348
TCONS_00030053 lncRNA upstream 106339 47797889 ~ 47800811 (+) True XLOC_014347
TCONS_00029738 lncRNA upstream 122178 47783092 ~ 47784972 (+) False XLOC_014346
TCONS_00029737 lncRNA upstream 315914 47590029 ~ 47591236 (+) True XLOC_014345
TCONS_00030052 lncRNA upstream 458556 47438204 ~ 47448594 (+) True XLOC_014341
TCONS_00029741 lncRNA downstream 7731 47924670 ~ 47927811 (+) False XLOC_014350
TCONS_00029740 lncRNA downstream 7731 47924670 ~ 47927811 (+) True XLOC_014350
TCONS_00028477 lncRNA downstream 101804 48018743 ~ 48021067 (+) False XLOC_014352
TCONS_00028480 lncRNA downstream 101890 48018829 ~ 48021576 (+) False XLOC_014352
TCONS_00030054 lncRNA downstream 270242 48187181 ~ 48191116 (+) False XLOC_014362
TCONS_00028471 mRNA upstream 119875 47783137 ~ 47787275 (+) True XLOC_014346
TCONS_00028469 mRNA upstream 383848 47502581 ~ 47523302 (+) True XLOC_014343
TCONS_00028468 mRNA upstream 425532 47476908 ~ 47481618 (+) True XLOC_014342
TCONS_00028465 mRNA upstream 483522 47394270 ~ 47423628 (+) False XLOC_014340
TCONS_00028475 mRNA downstream 101525 48018464 ~ 48023442 (+) False XLOC_014352
TCONS_00028476 mRNA downstream 101530 48018469 ~ 48023271 (+) False XLOC_014352
TCONS_00028478 mRNA downstream 101863 48018802 ~ 48023324 (+) False XLOC_014352
TCONS_00028481 mRNA downstream 101903 48018842 ~ 48023434 (+) False XLOC_014352
TCONS_00028482 mRNA downstream 102131 48019070 ~ 48023348 (+) True XLOC_014352
TCONS_00028470 other upstream 332327 47574615 ~ 47574823 (+) True XLOC_014344
TCONS_00028459 other upstream 597767 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other upstream 600412 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028450 other upstream 1626219 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028436 other upstream 2398169 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028474 other downstream 101067 48018006 ~ 48018346 (+) True XLOC_014351
TCONS_00028479 other downstream 101867 48018806 ~ 48023408 (+) False XLOC_014352
TCONS_00028484 other downstream 116360 48033299 ~ 48033440 (+) True XLOC_014354

Expression Profile

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