RNA id: TU209754


Basic Information

Item Value
RNA id TU209754
length 3672
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G184927
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75592282 ~ 75596048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCTCATGTACtttctgtattgatttgttgttaatcaAAAAGgatgaacatttattttttagCTTTGAGAAAGATCCGGCAAGTGATGCGTTTTCCCGGGAACTGCTCACACGAgcatagtaacatagtaacaaGCGATGCGTTTTCCCGGGAACTGCTCACACGAgcatagtaacatagtaacagATTTGTGGGAGAGAAGCCGCAACCAAAACTTTTATTTGTGATGCAGATCGGCGTGACGGTTAGTAAAATCAAaccacattttattggtcacatacaaatggttagcagatgttaatgagagtgtagcgaaatgcttgtgcttctagtacagacagtgcagtagtatctaacaattatctaacaattccccaacaactacagttgaagtcagaagtttacatccacttaggttggagtatttaaaactagtttttccaaccactacacaaatttcttgttaaactatagttttggcaagtcggttaggacatctactttgtgcatgacaagtattttttccaacaattgtttacatacagattatttcactgtaggtcagaagtttacatactaagTTGACAGTGTCTTTAAACACATTAGAAAATTCccaaaaattatgtcatggctttagaagcttctgctaatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactgcctctttgcttgacatcatgggatcaatagtacacaagtatatacaccatgggatcacacagccgtcatactgctcaggaaggagaagccatttgatttgatttgatttctgtctcctagagatgaacgtgctttggtgcgaaaagtgcaattcaatccaagaacaacagcaaaggactttgtgaagatgctggaggaaaccggtacaaaagtaactatatccagagtaaaacgagtcctatatcgacataacctgaaaggccgctcaacaaggaagaagccactgctccaaaactgccaaaaaagccagactacggtttgcaacttcacatggggacaaagatcgtactttttggagaaatgtcctctggtctgatgaaacaaaaatagaactgattgaccataatgaccgtcgttatgtttggaggaaaaagcagGAGACTTGCAagcaaagaacaccatcccaaccgtggagcACGGGGGTGcaagcatcatgttttgggggtgttttgctgcaggagggactggtgcacttcacaaaatagaaggcATCATGAGCAAGGAAAAgtatatggatatattgatgcaacatctcaagacatcagtcaggaagttaaagcttggttgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctggcctcaatcctatagaaaatttgtgggcagaactgaaaaatcctgtgcgagcaaggaggcctagaaacctgacttagttacaccagctctgtcaggaggagtgggccaaaattcacccaacttattgtggaaagcttgtggaaggctacccgaaacatttgacccaagttaaccaatttaaaaggcaatgctaccaaatactaattgtgtgtgtgtgtgtgtgtgtaaacatctgacccacagggaatgtgatgaaagaaataaaagctgaaataaatcactactattattctgacatttcacattcttaatataaactggtgatcctaactgacccaagagatggaatttttactaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctgaggtgtatgtaaacttatgacttcaactgtaagtgtccaacaagcttttgtAGTCTTGCTTTTCCTGGGACTCCAGAAGATTTAAGAGGAACAGGTATGGCAGCGGAGAGGCCTGGTGTTTTCCTGGGACTCCAGAAGATTTAAGAGGAACAGGTATGGCAGCGGAGAGGCCTGGTGTTTTCCTGGGACTCCAGAAGATTTAAGAGGAACAGGTATGGCAGCGGAGAGGCCTGGTGTTTTCCTGGGACTCCAGAAGATTTAAGAGGAACAGGTATGGCAGCGGAGAGGCCTGGTGTTTTCCTGGGACTCCAGAAGATTTAAGCGGAACAGGTATGGCAGCGGAGAGACCTGGTGCGTAATTGTGCAACAGAACAAAGACAGACAGGCTTGGGATGTAGACTATAGTCTAAATTAGAAGCATATGCATATTAGCCCATAATTCCTAAGCTCAATACTGCAGTGAATATATCCCGTAAATTtacacaaaatatttattttttatcagatAACAAAATCATAGGTAGCCTACACTGTGCTCCCGAGGCTGCGCTGAGTGCGCTCCCTCCCAGTCCCCTGGTACCAGCTTGAAAAGCTACCCTATAGTTTCAGCCTTTTAGGGACAAGAAATGTAGCCTACAACAACGTAATGAAGAATGttattgttttcaagtgagtacaAAACTCTAGTCTAGGCTGTAGACTGCAGTGAAAAGCCTGTCATTTGAATAACTGCTCAAAAGCCTGGTGTTTTGAATGCATATTCATTTCAAATTGATTGCATCTAGCCTGCCTGATTGGACAATCATTTGGAtacattgtttttccccctcaaatGTTTAGCCTTCAAGGTCCAGGCACATTAGCAAGCCAGCAACATGGGGTATTTTCTCAGGATTTATCAGCTAACAGAAACATGCTAATGCAGGGATCTCTAGTGGCGAGCATACAAATTATGATAATGCGGAGGAAGTTTGGCTTCAGTGTTTAAAAGCGTTTGAAAATGAAGTGGATACTATTAGAGATTGGTGCTGTTGAGGTATTCAGAGCACTACGTAACCTACGTAATGCAGAGCCTATATCACATGACATTTCTGGTACAATTCCGAAACATCTAAACAATGACTCCTTTTGCGAAAAGTCTACTAAACAAGAGTTAATTTAATGTTTTTCCAAGAATGTAAAACTGTATACAATAAGTCCCCACTATACCTAGGGTACTCAAACGTGGAACTTGTAGGTAAGTGAAGTGCAAACTGTCACGTCCTGCAGTCACATCCTGGTCTTGAGGGGGTCCTGAGTGCTTAGGGGGTAGGGGCTAGAGGCTATTTCTGGACTGGACCACAGCTGTGCCCTGTTGTCACTTGGCCTTGCTGGGGGCCATGCCGAGGGACTAAGGGGTAGTGGATAGGGATAGGGATTGTTTCTGGACCGGACCACAGCTGTGTGGGTCCTGCCTAGCGTCACATCTTGGCCTTGAGAGGGACCATACCGAGAGTCTTTAGGAAGGTCTCCAAGGTAGACAGGTACTCCTGGGGGTGTTGTCTCAGGTGGCCTGCATGTGTTGACTCCTCCCATTTCCTGTCTGTCACCTCCATCCCTCGTTTTCTCCAATAGGCGATGATCTCCTCCATGCCCTCCGGGTCGCACAGTGCGTCGTTCTGGCAGAAGAAGACGAGGGCGGGTGCGGTGACAGGGTTATTCCAGAAGACATCAATGCCGTTGTTGAAGTAGTCGACTGTGTGGTGTTTGAAGGCTCTGAAGTAGAGCATACTGGCCCATTTCACCTGGCTCTCCAGCCGGGGGAGCAGGATCTTACCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209735 lncRNA upstream 16680 75575371 ~ 75575602 (+) True G184914
TU209706 lncRNA upstream 37669 75553328 ~ 75554613 (+) False LOC118942025
TU209707 lncRNA upstream 37669 75553328 ~ 75554613 (+) True LOC118942025
TU209716 lncRNA upstream 39554 75552379 ~ 75552728 (+) True G184896
TU209713 lncRNA upstream 43720 75548284 ~ 75548562 (+) True G184893
TU209765 lncRNA downstream 10122 75606170 ~ 75606650 (+) True G184936
TU209767 lncRNA downstream 13468 75609516 ~ 75609727 (+) True G184938
TU209784 lncRNA downstream 60152 75656200 ~ 75661642 (+) True gcsha
TU209791 lncRNA downstream 61796 75657844 ~ 75659056 (+) True G184959
TU210067 lncRNA downstream 177718 75773766 ~ 75781152 (+) True G185186
NM_001145890.1 mRNA upstream 25116 75565479 ~ 75567166 (+) True lep
XR_005037883.1 mRNA upstream 38393 75553249 ~ 75553889 (+) False LOC118942025
XM_021571914.2 mRNA upstream 286991 75278870 ~ 75305291 (+) True LOC110496163
XM_036955534.1 mRNA upstream 335443 75147173 ~ 75256839 (+) False LOC110501950
XM_021571949.2 mRNA downstream 27197 75623245 ~ 75634823 (+) True LOC110496192
XM_021571992.2 mRNA downstream 60131 75656179 ~ 75661643 (+) False gcsha
XM_021572014.2 mRNA downstream 117009 75713057 ~ 75718243 (+) True gtf3c6
XM_021572025.2 mRNA downstream 123755 75719803 ~ 75722571 (+) True LOC110496239
XM_036934208.1 mRNA downstream 130013 75726061 ~ 75730218 (+) True LOC110496246
TU209106 other upstream 504875 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 551192 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 705782 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 878168 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 1057256 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 571609 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 571609 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 837769 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 938330 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 1234365 76830413 ~ 76832500 (+) True G185718

Expression Profile