RNA id: TU210090


Basic Information

Item Value
RNA id TU210090
length 1815
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G185205
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75843761 ~ 75845575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATACTTTATAAGTGTGTCGGTGCACAGGTGCTCAATAGTGTAACACATCTCCAAGAAGGACAGGTGAGCCAGActcagagctagggttagggtgataATATGTTAGGGTTTTAGAACATGCTAAAATGTCTACTATGATTCCTGCTTATTTTCCACTAAACCATCTAATGCTTACGTTAGCGCGATCATAGCCACAGTATAACTCTAACTATGATAATTTAGTGATGTCATCTCTGTGTATGTTTCCATGGTAACTGTTCTGCCTGTTCTGTCTCCCGTGGTAACAGTGGGTTCTGTTGCGCCCATAGttgggaaaaaataaataaaatgattgTCCAAGTTAAATACAATTTCCTCCCCTCTGTATAAATACACACATCAGCACTGTGTCCGTTATTTCTATGTTAAATCTATAAATCACCTATATACACATATCCATTATTCTTCTGTACTCCAAAAATATGGTGCGATACTTAGAGGACAGCCTCAGTGGGTCACCGCGTGTCACAGccctcagagagaggggaaggaagagatGTTACACCAATCAGTAATAATAATCAAACATATGTAATACTCTGACAAATATCTTACTTCGTAagtccttctctgtgtgtgtgtgtgtgtgtatatactggtTGTGTATATACATCCCTGTGGGACAAGCAGTCCAGTGAAGAGTAGAATCATGTGAGAATGAATAAAGAATGGGTATAGATTCACAACGTGAGACTAAATATTCAACAGGACTAATAAGCTAGAATGTTAGAACATGATCAATTAATAAGATTCAACATTAATGTTTTTATGAACTAATCATATGAACATCATTAATAAGATTAAAAGTTGACAAGTAGCAGATCAAATAAGATTGTCGTCAGTACTGGTGTTTACCTGAGTGTGAGGCTTGGACCCATGAAACAAAACCTCAGAGATGATTACAATGGTATTCACACACGCCCGCATacaagcgcgcgcacacacacacacacacacacacacatacacacacacacacacacacacacacacacactgtcacacactatCACACCCCGATAccttcacatgcacacacactcccacacagatATAGAAGTCAGACACTATAAACCAGGACTCAGGAGAAACAGTCTTCCCTCCCTGCTGCTCTGACAGACTCACTTCTTCAGGATCAAAAGTAGTTTTAGCATCTCATTATCATCTTATAACACAAAACACAGAGTGCCAAGGAGGAAAGCTAAAACCCTAGGTGAGAGTTGATGATGTGATGGAGGTGATACAGTtgacgtcggaagtttacattcacttaggttggagttattaaaacttgtttttcaaccactccacaaatctcttgttaacaaactatagttttggcaagttggttaggacatctactttgtgcatgacacaagtcatttttccaacaattgtttatagaagGATTATTtcgcttataattcactgtatcacaattccagtgggtcagaagttcacactaagttgactatgcctttaagcagcttggaaaattccagaaaatgatgtcatggcttcagaagcttctgataggctaattgacataatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctgagaaaaacaattgtaaacctccacaagtctggttcatccttgggagcaatttccaaacgccggaaggtaccactttcatctgtacaaacaataatatgcaagtataaacaccatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210088 lncRNA upstream 360 75842846 ~ 75843401 (+) True G185204
TU210089 lncRNA upstream 562 75842626 ~ 75843199 (+) False G185204
TU210076 lncRNA upstream 3217 75839777 ~ 75840544 (+) True ptprq
TU210070 lncRNA upstream 46180 75797248 ~ 75797581 (+) True otogl
TU210067 lncRNA upstream 62609 75773766 ~ 75781152 (+) True G185186
TU210097 lncRNA downstream 10554 75856129 ~ 75856857 (+) True G185211
TU210114 lncRNA downstream 138475 75984050 ~ 75984401 (+) True G185228
TU210222 lncRNA downstream 258548 76104123 ~ 76104424 (+) True G185326
TU210252 lncRNA downstream 304960 76150535 ~ 76150879 (+) True G185352
TU210272 lncRNA downstream 342000 76187575 ~ 76187870 (+) True G185367
XM_036955622.1 mRNA upstream 1215 75798506 ~ 75842546 (+) False ptprq
XM_036955623.1 mRNA upstream 1215 75798506 ~ 75842546 (+) False ptprq
XM_036955624.1 mRNA upstream 1215 75798506 ~ 75842546 (+) False ptprq
XM_036955629.1 mRNA upstream 1215 75798506 ~ 75842546 (+) False ptprq
XM_036955641.1 mRNA upstream 12289 75829380 ~ 75831472 (+) True LOC118942030
XM_021572129.2 mRNA downstream 48614 75894189 ~ 75902042 (+) False LOC110496295
XM_021572122.2 mRNA downstream 48780 75894355 ~ 75902042 (+) False LOC110496295
XM_021572113.2 mRNA downstream 48782 75894357 ~ 75902042 (+) True LOC110496295
XM_021572140.2 mRNA downstream 70062 75915637 ~ 75935997 (+) True LOC110496313
XM_036955699.1 mRNA downstream 94194 75939769 ~ 75982606 (+) False LOC110496319
TU209106 other upstream 756354 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 802671 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 957261 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 1129647 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 1308735 74529649 ~ 74535026 (+) True G183361
TU210196 other downstream 322082 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 322082 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 588242 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 688803 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 984838 76830413 ~ 76832500 (+) True G185718

Expression Profile