RNA id: TU210935


Basic Information

Item Value
RNA id TU210935
length 1242
lncRNA type read_through
GC content 0.48
exon number 2
gene id G185939
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75871061 ~ 75935987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTGTTTATTAGTCATTAGAGCCTTCAGTCTGAGAACCAATCGTTATGCTCCAATCAGATAGACCTCCCCCAACCAACCAGCATGCAGTTGACACCCCAAACCCTGACCAATCTCACTCCCTAGCTGCTCTGCTTCACAGGACCTTGTTTAGCTGAACCTAGAGCCAGGTCTGCTGGAGATGCTGTATGCAAGAATAAGATTACAGTAAGTCTGCATCTCAAATGACACcaattacctatatagtgcactactttagtagcCAACTCTGACCATTGGTCAAAAAGTAGGGCATATTGAGTCATCTACAACAggatttcccaaactcggtcccccGCCCCccgccctagcactacacagataATTCAATTAACCAACTTATCATCCAGCTTTGAttctttgaatcagctgtgtagtgttggggGAAAATCTAAACGTGCAACCATTGGGGGCCCCAGGATCgcgtttgggaaaccctgatctACAAGGTATAGAGTGTCATTTGGAATGCAGACAGACTACAGTAAGACTATATATGTAATGTGACTGAGCTTGATACTGGTTCAGTCTGACCAGAATAAGCGGCTTAAGCTGCTTCACACACACCCTTCTAGGTGTGAAGTAAATCATCATCCCATGAAGAACAATTAAGAGAAATCATAAACCCAGAGTAAGAACATACAGTGCGTTTGAGAAGCAGAGAGCAAACGTTTAGTTAGCATGACTGCTGCTAGAGAGGGAGCTGCTACTGTCACACATGTGTATGTGCGGACACGCATGTGTATGTGCGGACACgcagtcacacatacacacgaaGCAGTCCCCAGGAGTTGATCAGTTGGCCCTGGAAGGTGGTGAGAAGTGAAGGGGATTTGGGGATTAGCCCTTGCTGGGTGAAAGGggggtttacacacacacacacacacacacacacacacaaatacgcacACCCAGTACTGGGCTTCCAACTCCATTAAGCAAAGACCTCTAtgagtaaagggggggggggggacagcctGCTAACCAGAGGGATGGGGGGCACTCCTTTTAGCCACACCTCCTGAGTGCAGTCAGCTACAGAAGGCCCACCCAGCCAGCTAGCTGCCATGACGatagcacgcagacacacacacacacacacacacacacacacacacactcacacgcaaacACGCAAACACGCACATTATACACCTTATAATGTAGCAAGATGTTGCCGAAAGAGATGGTAGCCTCGCTTcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210990 lncRNA downstream 13383 75856463 ~ 75857678 (-) True G185992
TU210936 lncRNA downstream 25747 75843775 ~ 75845314 (-) True G185940
TU210983 lncRNA downstream 27585 75842601 ~ 75843476 (-) True G185985
TU210948 lncRNA downstream 72952 75796577 ~ 75798109 (-) True G185952
TU210947 lncRNA downstream 74609 75796244 ~ 75796452 (-) True G185951
TU211114 lncRNA upstream 140431 76076418 ~ 76076724 (-) True G186106
TU211120 lncRNA upstream 147793 76083780 ~ 76084539 (-) True G186112
TU211132 lncRNA upstream 166196 76102183 ~ 76102549 (-) True G186120
TU211133 lncRNA upstream 166743 76102730 ~ 76103045 (-) True G186121
TU211135 lncRNA upstream 170791 76106778 ~ 76107013 (-) True G186123
XM_036955551.1 mRNA downstream 169255 75688498 ~ 75701806 (-) True LOC110501970
XR_005037881.1 mRNA downstream 207396 75661760 ~ 75663665 (-) False LOC118942024
XR_005037882.1 mRNA downstream 207410 75661762 ~ 75663651 (-) True LOC118942024
XM_021571980.2 mRNA downstream 214897 75644341 ~ 75656164 (-) False LOC110496199
XM_021572187.2 mRNA upstream 49169 75985156 ~ 75988962 (-) False tnni1c
XM_021572222.2 mRNA upstream 49169 75985156 ~ 75989010 (-) False tnni1c
XM_021572168.2 mRNA upstream 49169 75985156 ~ 75989027 (-) False tnni1c
XM_021572214.2 mRNA upstream 49169 75985156 ~ 75989056 (-) False tnni1c
XM_021572177.2 mRNA upstream 49624 75985611 ~ 75988974 (-) False tnni1c
TU210008 other downstream 264413 75606227 ~ 75606648 (-) True LOC110496186
TU208774 other downstream 1138424 74730872 ~ 74732637 (-) True G184006
TU208238 other downstream 1760270 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 1877516 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 2194638 73676212 ~ 73676423 (-) True G182882
TU211053 other upstream 49172 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 157183 76093170 ~ 76099850 (-) True adm2b
TU211216 other upstream 337537 76273524 ~ 76293392 (-) False G186197
TU211217 other upstream 338987 76274974 ~ 76293392 (-) True G186197
TU211248 other upstream 385820 76321807 ~ 76323890 (-) True si:dkey-234i14.6

Expression Profile