RNA id: TU211000


Basic Information

Item Value
RNA id TU211000
length 897
lncRNA type intronic
GC content 0.45
exon number 2
gene id G186001
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75876195 ~ 75877130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaaacccttgaatcaatcggtttgtccaaacttttgactggtactgtatatacacaattataagggcacagggcgagacccagatgcagacacgggaggcagatggttcgagtctgatatttattataatccaaggggcaggcaatagaatggtcgtggacaggcaaaagatcataaacaaggtcagagtccaggaggtacagagtggcaggcaggctcgaggtcagggcaggtagTATGGCCAGGCAGGCGGATTCAGAGTCAAGGCTGGCAAGGGTCataaccgggaggactagcaaaagagaaaCAAGAAAAAGCAGGAGCACGGAAAAACACACGggttgacttgacaagacaagacaaactggcaacagacaaacagggaacaccggaataaatacccagggactaatggggaaaacaggtgacacctggaggtgggtggagacaatcactaagactgGTAAAAACAGCAGTTTGGACATAGAACTATCAAAAAGGTTTCAAATCAAACTCCTCATTCAGGCCAAGATACGGGACAGTGTGTTGACCCTGTGGATCCAGAAAGATTTCCTTTGAAGTAGTTTCCTCCCAATGTCCCCTCCCCTGCATGACATCTTAACCCTTTCTATCCCAATGTATCTCAGAGAACTAATAGGGTGTCCGGTTTGAGCAAAATGAACGGCAACAgggtttatatacagtgcattcggaaagtattcagaccccttgactttttccacattttgttatgttacagccttattccaaaatagattacatagtgacaaagcaaaaacagttttttagaaatgttggtattcaaaccctttactcagtactttgttgaagtgcctttggcagcgattacagagtcttcttgggtatggtgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210990 lncRNA downstream 18517 75856463 ~ 75857678 (-) True G185992
TU210936 lncRNA downstream 30881 75843775 ~ 75845314 (-) True G185940
TU210983 lncRNA downstream 32719 75842601 ~ 75843476 (-) True G185985
TU210948 lncRNA downstream 78086 75796577 ~ 75798109 (-) True G185952
TU210947 lncRNA downstream 79743 75796244 ~ 75796452 (-) True G185951
TU211005 lncRNA upstream 10229 75887359 ~ 75887638 (-) True G186006
TU210934 lncRNA upstream 55549 75932679 ~ 75935987 (-) True G185939
TU211114 lncRNA upstream 199288 76076418 ~ 76076724 (-) True G186106
TU211120 lncRNA upstream 206650 76083780 ~ 76084539 (-) True G186112
TU211132 lncRNA upstream 225053 76102183 ~ 76102549 (-) True G186120
XM_036955551.1 mRNA downstream 174389 75688498 ~ 75701806 (-) True LOC110501970
XR_005037881.1 mRNA downstream 212530 75661760 ~ 75663665 (-) False LOC118942024
XR_005037882.1 mRNA downstream 212544 75661762 ~ 75663651 (-) True LOC118942024
XM_021571980.2 mRNA downstream 220031 75644341 ~ 75656164 (-) False LOC110496199
XM_021572081.2 mRNA upstream 24077 75901207 ~ 75915303 (-) False ddx11
XM_021572088.2 mRNA upstream 24077 75901207 ~ 75915303 (-) False ddx11
XM_021572101.2 mRNA upstream 24077 75901207 ~ 75915303 (-) False ddx11
XM_036955654.1 mRNA upstream 24077 75901207 ~ 75915303 (-) True ddx11
XM_021572187.2 mRNA upstream 108026 75985156 ~ 75988962 (-) False tnni1c
TU210008 other downstream 269547 75606227 ~ 75606648 (-) True LOC110496186
TU208774 other downstream 1143558 74730872 ~ 74732637 (-) True G184006
TU208238 other downstream 1765404 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 1882650 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 2199772 73676212 ~ 73676423 (-) True G182882
TU211001 other upstream 229 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 108029 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 216040 76093170 ~ 76099850 (-) True adm2b
TU211216 other upstream 396394 76273524 ~ 76293392 (-) False G186197
TU211217 other upstream 397844 76274974 ~ 76293392 (-) True G186197

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010757 True 293 lncRNA 0.33 1 NC_007123.7 37003473 ~ 37003765 (+)