RNA id: TU211132



Basic Information


Item Value
RNA id TU211132
length 367
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G186120
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76102183 ~ 76102549 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctatactctctacactcgccagttttagctttagccagcaccatcttcagattagccttaacgtcggtagccctgccccctggtaaacagtgtatgatcgctggatgattcgttttaagtctaatactgtgggtaatggagtcgccaatgactagggttttcaatttgtcagagctaatggtggtaggcttcggcgtctcagacccaataacgggaggagtagagacaagagaaggctcggcctcagactccgactcgcataatggggaaaaccggttgaaagtttctgtcggctgaatgagcgacaccggttgaggattcctacagcatttccctccagaaaccttgagaaagttgtctggctgcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU211120 lncRNA downstream 17644 76083780 ~ 76084539 (-) True G186112
TU211114 lncRNA downstream 25459 76076418 ~ 76076724 (-) True G186106
TU210935 lncRNA downstream 166196 75871061 ~ 75935987 (-) False G185939
TU211133 lncRNA upstream 181 76102730 ~ 76103045 (-) True G186121
TU211135 lncRNA upstream 4229 76106778 ~ 76107013 (-) True G186123
TU211139 lncRNA upstream 15946 76118495 ~ 76118927 (-) True G186127
TU211159 lncRNA upstream 68749 76171298 ~ 76171526 (-) True G186146
TU211066 lncRNA upstream 70216 76172765 ~ 76172998 (-) True G186060
XM_036955816.1 mRNA downstream 2274 76094322 ~ 76099909 (-) False adm2b
XM_021572362.2 mRNA downstream 32350 76066800 ~ 76069833 (-) True miox
XM_021572195.2 mRNA downstream 113126 75985611 ~ 75989057 (-) False tnni1c
XM_021572159.2 mRNA downstream 113155 75985611 ~ 75989028 (-) False tnni1c
XM_021572204.2 mRNA downstream 113165 75985611 ~ 75989018 (-) False tnni1c
XM_036955838.1 mRNA upstream 32814 76135363 ~ 76167481 (-) False ppp6r2b
XR_005037930.1 mRNA upstream 32814 76135363 ~ 76167483 (-) False ppp6r2b
XM_036955821.1 mRNA upstream 35103 76137652 ~ 76167481 (-) False ppp6r2b
XM_036955826.1 mRNA upstream 35103 76137652 ~ 76167481 (-) False ppp6r2b
XM_036955830.1 mRNA upstream 35103 76137652 ~ 76168156 (-) True ppp6r2b
TU211125 other downstream 2333 76093170 ~ 76099850 (-) True adm2b
TU211053 other downstream 112610 75985159 ~ 75989573 (-) True tnni1c
TU211001 other downstream 224123 75877359 ~ 75878060 (-) True G186002
TU210008 other downstream 495535 75606227 ~ 75606648 (-) True LOC110496186
TU208774 other downstream 1369546 74730872 ~ 74732637 (-) True G184006
TU211216 other upstream 170975 76273524 ~ 76293392 (-) False G186197
TU211217 other upstream 172425 76274974 ~ 76293392 (-) True G186197
TU211248 other upstream 219258 76321807 ~ 76323890 (-) True si:dkey-234i14.6
TU211715 other upstream 1067414 77169963 ~ 77171639 (-) True LOC110496628
TU212651 other upstream 1367844 77470393 ~ 77471097 (-) False G187490

Expression Profile