RNA id: TU211133



Basic Information


Item Value
RNA id TU211133
length 316
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G186121
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76102730 ~ 76103045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtaaccaggaggtgaggcttCATTTagcacagtaaattcatcaggcttaagccatgtttcagtcaggccatctcacatcaagattatgatcagtgattagttcattgactataattgcctttgaagtaagggatctaacattaagtagccctattttgagatgtgaggtatcacgatctctttcaataatgacaggaatggaggaggtctttattctagtgaaattgctaaggcgaacaccgccatgttaagttttgcccaacccaggttGATGCacagtggcagactccactaagctggcaggctggcaaaAAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU211132 lncRNA downstream 181 76102183 ~ 76102549 (-) True G186120
TU211120 lncRNA downstream 18191 76083780 ~ 76084539 (-) True G186112
TU211114 lncRNA downstream 26006 76076418 ~ 76076724 (-) True G186106
TU210934 lncRNA downstream 166743 75932679 ~ 75935987 (-) True G185939
TU211005 lncRNA downstream 215092 75887359 ~ 75887638 (-) True G186006
TU211135 lncRNA upstream 3733 76106778 ~ 76107013 (-) True G186123
TU211139 lncRNA upstream 15450 76118495 ~ 76118927 (-) True G186127
TU211159 lncRNA upstream 68253 76171298 ~ 76171526 (-) True G186146
TU211066 lncRNA upstream 69720 76172765 ~ 76172998 (-) True G186060
TU211160 lncRNA upstream 73904 76176949 ~ 76178104 (-) True G186147
XM_036955816.1 mRNA downstream 2821 76094322 ~ 76099909 (-) False adm2b
XM_021572362.2 mRNA downstream 32897 76066800 ~ 76069833 (-) True miox
XM_021572195.2 mRNA downstream 113673 75985611 ~ 75989057 (-) False tnni1c
XM_021572159.2 mRNA downstream 113702 75985611 ~ 75989028 (-) False tnni1c
XM_021572204.2 mRNA downstream 113712 75985611 ~ 75989018 (-) False tnni1c
XM_036955838.1 mRNA upstream 32318 76135363 ~ 76167481 (-) False ppp6r2b
XR_005037930.1 mRNA upstream 32318 76135363 ~ 76167483 (-) False ppp6r2b
XM_036955821.1 mRNA upstream 34607 76137652 ~ 76167481 (-) False ppp6r2b
XM_036955826.1 mRNA upstream 34607 76137652 ~ 76167481 (-) False ppp6r2b
XM_036955830.1 mRNA upstream 34607 76137652 ~ 76168156 (-) True ppp6r2b
TU211125 other downstream 2880 76093170 ~ 76099850 (-) True adm2b
TU211053 other downstream 113157 75985159 ~ 75989573 (-) True tnni1c
TU211001 other downstream 224670 75877359 ~ 75878060 (-) True G186002
TU210008 other downstream 496082 75606227 ~ 75606648 (-) True LOC110496186
TU208774 other downstream 1370093 74730872 ~ 74732637 (-) True G184006
TU211216 other upstream 170479 76273524 ~ 76293392 (-) False G186197
TU211217 other upstream 171929 76274974 ~ 76293392 (-) True G186197
TU211248 other upstream 218762 76321807 ~ 76323890 (-) True si:dkey-234i14.6
TU211715 other upstream 1066918 77169963 ~ 77171639 (-) True LOC110496628
TU212651 other upstream 1367348 77470393 ~ 77471097 (-) False G187490

Expression Profile