RNA id: TU211217


Basic Information

Item Value
RNA id TU211217
length 1901
RNA type TUCP
GC content 0.51
exon number 9
gene id G186197
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76273524 ~ 76293392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTTGGCTCATTTGTTTTGGTGCATCAACCAACCAGACCAGTGTGAAATGGCATGGATGTTATAAAAGTCACTGTAATCTAACAGAGATCTAAATATACTGTAAAACTGACTACAACTCACCAAAAACTTGGTCACAAATAAAAATCAACTTTATAAAAAGAGTCAGAGACTTCAAGGCGTTTTCAAAttgggtagagaaagagagtacggagagagagtgtgagagggagagagagagagatcaagagaaaGAGGGGTTCTTGTACTCTACTGGAGCGACCAGGCTGCTCCTCTATAACACTTAGAACCACGTTCACCACAGACCACAGCCTGCAATATCATTGGGAACTTGTCACAATGTGCTGATTTAATTGGTTCTTGCTAAGGAATGGTATAGATTGAGTGGCTTTGCTATAGGGAGTTGTCTTAGGACCGCCCCTGGTCCTTCAGATGTTATTTTGGTAGAAATGTGATCACAATACAATATTATTACAATCATTAATAGAATACATGTTGCTTACATTGTCATGACATTATTTCATCAAGAGTTTAATTTAAATCATTGAGCAGTTGTGGTAATTGAAAGTCTGTTCATATTACAAAAACATTTGTTTATGACACCTCTAGACTACTATTCATAGATCTCTTAATTCATCATAAATCACAAATGTGTTATGTTTATTTCACTTCCTGAACCAGTTTCTCACAGGGCCAATCAGTGAACAGTGACATCACCATGATGATTTAGGAGTGTCGACCTTAGCACTGGACAGATTCCATGTTAGAGAGGATCAGCCTGAGAAAGGAACTGCACATATTTGCTAACCTAGATCACTTCATGAGTAGATGTTTAGGATACAGGGTGATTCTGCGCAGCACCGTCCTCAGGCTAAACCCCTGGATCACCAGGTGTACAGATCCTTGTTACAGAGGTTAGGGGATCTAAAGTACTCATTGGCCGACCTTTCTCAACAAGTAAACAAAAGTCATGTGACTAGGAATGACATCATGCAACATTAAAAGGCATCGTCATGGTAATGATAACATCATCAGACGATCTCCCGTGACTTCCTAATGGCACAGCAGAGCAGCATGCTGAAGATCATCCCAAACACcaagATGACTCCAATAGCGATGCCCACTCCTCCTATGATGTGCAGCTTGGAGTCAAACACTTCATCTATAGCATCAGGACAGCTCTTGGTGATGAGGCTGTCCAGCCCATCTCTTGGGGGACAGGTGTCTTTGGCAAAGTCCTCAAAGGAACCTGTTGGTCCGCAGCAGTCCAACCCAGTCTGTATGAGACGGagtgtctctctcagtgtgtcCTGTGAAGTGTTCTTGTAGTTCTGATATGTCTCCAAGTAGAACTGAGTGATGTCATCAACCACCTTGCTTTGGTTGGAGAACCCCCAGATTCCAGCGGCGACCTCGATGGCGAATAtgatgaggaggaagaagaagaaCAGCCCCAGCATACACGGTGACTCCTGAATCGCTCCACAGCATCCCAAGAACCCAACAACCATCATTAATGACCCTGCAATTATGAGGATATGTACacCTGTGAAGAAGACATGGGGAGATTCTGCTCCTTCAAACAGCCCTCTGGTCTTTGGGTCaaacctcaaccacaaccctataGCCAGCACTCCTGTACCTGCAagCCAGAAGAAGACGTTGAAGATAAACATGATGTACTTCACACACCTGATCCCTCCGAACACTGCCATGTTACTAACGTgatctctgtctgtaacagagcaGAACACTTCTCTCCTGTTTCCCTAGACAGCCtcatggagagtgagagagacaaagaaagaggagATAAAGAGAGCAAAAGAGCGATAGACAGAGAAAGTAGTAGAGAGTATAAGTCACACCCTGAAGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211205 lncRNA downstream 6663 76266356 ~ 76268311 (-) True G186191
TU211062 lncRNA downstream 93419 76180043 ~ 76181555 (-) True G186056
TU211069 lncRNA downstream 96065 76178154 ~ 76178909 (-) True G186063
TU211160 lncRNA downstream 96870 76176949 ~ 76178104 (-) True G186147
TU211066 lncRNA downstream 101976 76172765 ~ 76172998 (-) True G186060
TU211232 lncRNA upstream 10225 76303617 ~ 76303841 (-) True G186211
TU211237 lncRNA upstream 13395 76306787 ~ 76307123 (-) True G186216
TU211236 lncRNA upstream 15286 76308678 ~ 76308854 (-) True G186215
TU211241 lncRNA upstream 22196 76315588 ~ 76316092 (-) True G186220
TU211257 lncRNA upstream 48859 76342251 ~ 76342501 (-) True G186234
XM_036955850.1 mRNA downstream 43399 76188320 ~ 76231575 (-) True LOC110496478
XM_021572399.2 mRNA downstream 62055 76209339 ~ 76212919 (-) True LOC110496468
XM_036955830.1 mRNA downstream 106818 76137652 ~ 76168156 (-) True ppp6r2b
XR_005037930.1 mRNA downstream 107491 76135363 ~ 76167483 (-) False ppp6r2b
XM_021572453.2 mRNA upstream 28365 76321757 ~ 76341834 (-) False si:dkey-234i14.6
XM_021572465.2 mRNA upstream 72279 76365671 ~ 76379819 (-) False prpf18
XM_021572474.2 mRNA upstream 72279 76365671 ~ 76379828 (-) True prpf18
NM_001171855.1 mRNA upstream 106828 76400220 ~ 76410715 (-) True LOC100329197
XM_021572502.2 mRNA upstream 122810 76416202 ~ 76434654 (-) False chkb
TU211125 other downstream 175124 76093170 ~ 76099850 (-) True adm2b
TU211053 other downstream 285401 75985159 ~ 75989573 (-) True tnni1c
TU211001 other downstream 396914 75877359 ~ 75878060 (-) True G186002
TU210008 other downstream 668326 75606227 ~ 75606648 (-) True LOC110496186
TU208774 other downstream 1542337 74730872 ~ 74732637 (-) True G184006
TU211248 other upstream 28415 76321807 ~ 76323890 (-) True si:dkey-234i14.6
TU211715 other upstream 876571 77169963 ~ 77171639 (-) True LOC110496628
TU212651 other upstream 1177001 77470393 ~ 77471097 (-) False G187490
TU212754 other upstream 1409507 77702899 ~ 77703489 (-) True G187579
TU213521 other upstream 2323190 78616582 ~ 78617307 (-) True G188257

Expression Profile