RNA id: TU210356


Basic Information

Item Value
RNA id TU210356
length 1640
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G185431
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76308954 ~ 76310593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaagccTGTATGtagacagcagcctctctgtgttagtgatggctgtttaatggtctgatggccttgagatagaagctgtttttcagtctctcggtcccagctttgatgcacctgtactgacctcgccttctggatgatagcggggggaacaggcagtggcttgcatggttgttgtccttgatgatatttttggccttcctgtgacatcaggtgctgtagatgtcctggagggcaggtagtttgccccagtgatgcgttgtgcagacctcaccaccctctagaaagccctgcggttgtgcacggtgcagttgccgtaccaggtggtgatacagcccgacaggatgctctcaattgtgcatctgtaaaagtttgagagggttttaggtgacaagccaaatttcttcagcctcctgaggttgaaaaagcgctgttgtgccttcttcaccacactgtctgtgtgggtggaccatttcagtttgtcagtgatttGTACACCAAgtaacttaaaacgttccaccttctccgttgctgtcccgtcgatgtagataggggggtgccccctctgttgtttcctgaagtccacaatcatctcctttgttttgttgatgttgagtgagagttTTTTTTCCTGACACCATACGCCCagagctctcacctcctccctgtaggccgtcttgtcgttgttggtaatcaagcctactactgaaCTGTTGTATCGTCTGaaaatttgatgattgagttggaggcatgcatggccaagcagtcatgggtgaacagggagtacaggaggggctgaTCAGGCACCCttatggggccccagtgttgaggatcagcgaagtggagtaccttcaccacctgggggtggcccgtcaagaagtcctggacccaattgcacagggcagggttcagacccagggccttgagcttaatgattcgtttggagggtactatggtgatgaattctgagctatagtcaatgaacagcattcttacataggtattcctcttgtccagatgggatagggcagtgtgcagtgtgatggcgattgcatcgtctgtggacctattggggtggtaagcaaattgaagtgtgtctagggtgacaggtaaggtggaggtgatatgatccttgattagtctctcaaagcacttcaggatgacagaagtgagtgctatggggcgatagtcatttagttaagttacctttgccttcttggttACAGGAACAGTGGTGGCCATCTTAAAGAATGTggagacagcagactgggatatggagagattgaatatgtccgtaaacacaccagtcagctggtctgtgcatgctctgaggacgcaactagggatgccgtctgagcCGGCAGcattgcaagggttaacacgtttaaatgtcttactcacgtcggccacggagaaggagagcccacagtccttcgTAGCTggccacgtcggtggcactgtgttatcctcaaagcgggcaaagaacgtgtttagcttgtctggtgtCCACGACGTGGTTAGTTTTCCTTTTGTattccgtgattgtctgtagaccttgACTTATCCATTTCGTGTTTGAGcctttgaattgcgactccactttgccTTGATACTGacgtttgcctgtttgattgccttgcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210344 lncRNA upstream 8339 76300335 ~ 76300615 (+) True G185424
TU210281 lncRNA upstream 104918 76203256 ~ 76204036 (+) True G185376
TU210272 lncRNA upstream 121084 76187575 ~ 76187870 (+) True G185367
TU210252 lncRNA upstream 158075 76150535 ~ 76150879 (+) True G185352
TU210222 lncRNA upstream 204530 76104123 ~ 76104424 (+) True G185326
TU210380 lncRNA downstream 33399 76343992 ~ 76344405 (+) True G185450
TU210387 lncRNA downstream 40436 76351029 ~ 76351362 (+) True G185457
TU210389 lncRNA downstream 42496 76353089 ~ 76353307 (+) True G185459
TU210393 lncRNA downstream 43756 76354349 ~ 76400765 (+) True G185463
TU210391 lncRNA downstream 105622 76416215 ~ 76418354 (+) True G185461
XM_036955869.1 mRNA upstream 15543 76273512 ~ 76293411 (+) False cd9a
XM_036955873.1 mRNA upstream 15543 76276402 ~ 76293411 (+) True cd9a
XM_036955859.1 mRNA upstream 36791 76266403 ~ 76272163 (+) True LOC110496485
XM_021572387.2 mRNA upstream 127399 76167573 ~ 76181555 (+) False LOC110496459
XM_021572340.2 mRNA upstream 242275 76053982 ~ 76066679 (+) True lmf2a
XM_021572486.2 mRNA downstream 78936 76389529 ~ 76398538 (+) False LOC110496527
XM_021572492.2 mRNA downstream 78959 76389552 ~ 76398538 (+) True LOC110496527
XM_036990350.1 mRNA downstream 220826 76531419 ~ 76537667 (+) False LOC100135907
NM_001124274.1 mRNA downstream 221502 76532095 ~ 76537667 (+) True LOC100135907
XM_021572558.2 mRNA downstream 228083 76538676 ~ 76674073 (+) False mapk8ip2
TU210196 other upstream 139659 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other upstream 139659 76167657 ~ 76169295 (+) True LOC110496459
TU209106 other upstream 1221547 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 1267864 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 1422454 74886098 ~ 74886500 (+) True LOC110496116
TU210392 other downstream 123224 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 223785 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 519820 76830413 ~ 76832500 (+) True G185718
TU210667 other downstream 837060 77147653 ~ 77160850 (+) True LOC110502025
TU212151 other downstream 1466534 77777127 ~ 77780793 (+) True LOC110496763

Expression Profile