RNA id: TU210391


Basic Information

Item Value
RNA id TU210391
length 1877
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G185461
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76416215 ~ 76418354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGCATGTTTATTTGCAGTTCAGTTATACTTACACAGCAGCTGCATTGCAGGGAGAATATCAATAACACCAAAGGGTTTTGGACAGGATTGATGTGCAATGAAAAGAAAGTTACTTAATTTAGCTAGTTGACGAGACACTGGCTTCTAGACTAGGCAGCTTCATATTCTCGGAAATCGAACATTGGCCTACATCCACAACATATATTCTAACATTATACAAAAGGGTAACCTCACAGGTCCACCTTTATTAGAACTCACATCAAAACAAAGAGCACTTCACTGGGCAAATAAATAACAAATTATACTGAAAAACATTTCCATGTGTTCAAATGATTgccattggagaaaaaaaaaaacaaccatgATCCCATTTTCAAAATCTTTGGATCTGAATTCCAAAAGCATGCAGATATTCCATTTGGTTTTAATAATGTTAGGCAGGCAGACACGCACAGGAGCCAAATGCACATTTAAATAAGATACAACATCTGTTGTTGAAAGTCATGGACAGCTTTCTTTAACCATTGTGGTTCTTGGTCAGAAATGGAAAAGGACAAAACATCCAAACCTTGGGCAGAGTCAAACCGTGACAGACAGTTCTATACCAGTTTACTAGTAATGGAACAGCTTTAGAATGAATGGTAAACCTAGTCAGAATGCAATGACATCAAAGCCAGACaaaagctatatatatatatattttcataaaCTGCTCTCTTCTGAGAGGTTGTGCAATAAGCTGTTATTGTCTATaaccaaaaaaataataattttttaatCATTTAGTTTCAGGTCTACATTTGCTAATTTATCATTCAAAGTGTAAAATGACCCTCATTGTTGTGAAGAGGTAGAATGACACAAAACACTTGTGCCAGGAGGTGAAATGCGACACCTCCTGGCAgccatgTTGCTAAGTGATTTCTGACAACTGCAACCCCTCTATATATAGTTTGACTAGAGAAAATGCTAAAACAGACAGGTCATACATGGGTTTTAAGCCCAATTCAATCAGAACCAGTCATGGAGAAAGGTCAAAAACAACATCCTGTTTAAGAACATATTTGACTTACTATGCAATGGAGCATGTTCTTTTCTTACTAGTTCTGAATTAATAGGGCCAAGAGTCCAGATTTCCCTACTGCACTACAAAGAAACAGAACTACAGTATGAACAGAGTTGTGCTATGCAGCTTGATTCTCTGCCATGCTGTACTGTGTCCATGCATAGAACAGGCATTTAACAAACAAGTCAAGGAAAAAGAAAAAAGACGGCACAAAATGAGCATATTTCGACCCTGAAATCAAGGGTGTTCTGAAGTTCAACAATTACATTACGAGGTGGGGTAAAGAAAGAAGCAGAGTTGAATGACTAAAATAAAGCACATGACTACAGGGTTTGAAACATAAAATGTATGGAACCAGTAGATCATAACTAATGTAAACAAATAACATGCTTTTTTTTGCTGTGCATTTTCACAGAATTTCACATTTCATAGTAGGGGAAGATAAGTGCATTTTGTTGGAGTGCAGCTGAGTCCCTGCTTCACTGTTACTTGTCTCAGTCAGAGCAACGTATTGGATGCTACTAGATGGATGGGGTCCTGGTATATTAGAAACATCAAGTTCAAACAATAGATCATTTTGTAAAAATCCACCCAAGACTCTTCAGTGGGCGTTTACCCCTCATATTTGGTTTGGTTTCAACACTTAACAGATATGCCTAGCTAACTACGTTTCTGCATCAGGACAGTTGCGTACAGGAAGAATCAGCAGATATAAAAATGACAGTACATTCCATTGAAGTCAATCTGTTCTTTTAGCGATTTAGGAAAATAACTTTTTCTGCTTGAAGTAGGCATCAAATCGTGACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210393 lncRNA upstream 15450 76354349 ~ 76400765 (+) True G185463
TU210389 lncRNA upstream 62908 76353089 ~ 76353307 (+) True G185459
TU210387 lncRNA upstream 64853 76351029 ~ 76351362 (+) True G185457
TU210380 lncRNA upstream 71810 76343992 ~ 76344405 (+) True G185450
TU210356 lncRNA upstream 105622 76308954 ~ 76310593 (+) True G185431
TU210498 lncRNA downstream 255552 76673906 ~ 76714965 (+) False mapk8ip2
TU210502 lncRNA downstream 255552 76673906 ~ 76714965 (+) False mapk8ip2
TU210496 lncRNA downstream 256250 76674604 ~ 76676611 (+) False mapk8ip2
TU210501 lncRNA downstream 256250 76674604 ~ 76677734 (+) False mapk8ip2
TU210503 lncRNA downstream 256250 76674604 ~ 76677734 (+) True mapk8ip2
XM_021572486.2 mRNA upstream 17677 76389529 ~ 76398538 (+) False LOC110496527
XM_021572492.2 mRNA upstream 17677 76389552 ~ 76398538 (+) True LOC110496527
XM_036955869.1 mRNA upstream 122804 76273512 ~ 76293411 (+) False cd9a
XM_036955873.1 mRNA upstream 122804 76276402 ~ 76293411 (+) True cd9a
XM_036955859.1 mRNA upstream 144052 76266403 ~ 76272163 (+) True LOC110496485
XM_036990350.1 mRNA downstream 113065 76531419 ~ 76537667 (+) False LOC100135907
NM_001124274.1 mRNA downstream 113741 76532095 ~ 76537667 (+) True LOC100135907
XM_021572558.2 mRNA downstream 120322 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572567.2 mRNA downstream 120322 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572576.2 mRNA downstream 120322 76538676 ~ 76674073 (+) False mapk8ip2
TU210196 other upstream 246920 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other upstream 246920 76167657 ~ 76169295 (+) True LOC110496459
TU209106 other upstream 1328808 75086622 ~ 75087407 (+) False LOC110496136
TU209105 other upstream 1375125 75037252 ~ 75041090 (+) False LOC110496136
TU208835 other upstream 1529715 74886098 ~ 74886500 (+) True LOC110496116
TU210392 other downstream 15463 76433817 ~ 76434615 (+) True G185462
TU210492 other downstream 116024 76534378 ~ 76606975 (+) True G185549
TU210702 other downstream 412059 76830413 ~ 76832500 (+) True G185718
TU210667 other downstream 729299 77147653 ~ 77160850 (+) True LOC110502025
TU212151 other downstream 1358773 77777127 ~ 77780793 (+) True LOC110496763

Expression Profile