RNA id: TU210665


Basic Information

Item Value
RNA id TU210665
length 3567
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G185695
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77162015 ~ 77165608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTCATGTTAGAACTGACATGATAGAACTGTCATGATAGAACTGTCATGATAGAACTGACATGATAGAACTGTCATGATAGAACTGTCATGATAGAACTGACATGATAGAACTGACATGATAGAACTGTCATGATAGAACTGACATGATAGAACTGTCATGTTAGAACTGACATGATAGAACTGTCATGATAGAACTGTCATGATAGAACTGACATGATAGAACTGTCATGATAGAACTGTCATGATAGAACTGTCATGATAGAACTGACATGATAGAACTGTCTTGATAGAACTGTCATGATAGAACTGTCATGTTAGAACTGACATGATAGAACTGACATGATAGAACTGACATGATAGAACTGACATGATAGAACTGACATGATAGAACTGTCATGAGCGTCTTATAAAGAGTTGACATGATTTCCTATTATACAagtttattattgttatttgtaGGTAAAAAATATGTAGTATATTGGAGTTTCACAACAGTGAAGCATGTCTGTTCTCTATAATACATTTAGATCTACATTGTTGTATAACGGAGTCCCCTGAATGTGACCCAGGTGAACACTACAACCACTAAAACCTTTACTAGTCAACAGCAGCACTGAAACCTTTATGCTAAGTGAATATCCTTGTCACGGAGCCACACACCAGTCCAAACTATCTCTGTTAAACTTTATTTTGTCACCGTTTTGAGTAAGCGGATGTTAAATTCAATGTTGTGCAAACGTTGTAGGGATAACACTCACTGTCTCACATCGGACCTCACAGACAATCTCACTTATGACTCTGGTGACATAGGTGttgtcccaaatgacatcctTATCCCTACCGTGCCCTTCTTTTGATCAGAGATTTACATTTTGGGGCACTATATAAGGAAAAGGATATAATTTGGGACACTACCATACCGTCTGACTCCTTGGCTTTTGTGTTGGGTTGATTGTTGGTTTGTGTTTCTATAATGGAGGTGTGGATTTTGTAGCTCTTGGATTATGATGTTTAGAAGATACATTTTTCTATTCACTCGCCTAACATGAATTTCAGAGTGAACATTAAGAAAAGGAGAAACAAAAAATAGTAGATCCTCTCAAAAGGACTTTCACACTGTAAATCTGAACAAAACACGAATATTTGCTTTTTTATATTAATCACAAGCAATGTATATATATGATAGTTTTCATATACATTTTTGAAAATCAAAAattatatagatctatatatgaatgTTTGGCATATATGCATAGTTAACCACCTAGGAAAAAAGGTGTGATctgatttttattattttctatgaaCTAGGAGATTATTTGCACAAAACAAGGTGCTAGCATTACAGCCACCTATCATTACAGTGCATGTATGCTGTGAATGGAGGAACACCCTGACTCTCTGTACACAACCccctgtctgctgtgtgtgtgtgtggtagtgtgtgtttgtatgtgtggtgggtgtgtatatgtgtggtaGGTGTGCGTGTAAGTTGTTCAAACCCTCAAAGGTGGTCCACTGTAGCCTTAATTACATCAGAGATTCCTGGCAGTGGCTGTGTCACACACGTGGTGCACACACTGAAATCCAGATGTATAATCATTACAGGACCCTTTGATatctattagagagagagagagagaggagagagaaagagagagagagagagagagagagagagagagagagagagagagagagaatatactgGGGAGaacttcattttttatttattacattcTGTCTGTTCCTGTGTAGCCCTTGTCTGTgtgtgggggggggcagcgttTGGGCTGTGGCTTTaatgggagacagagacacagataaTTACAGTATTACCATCTGCTCTACAACACCTCTCTATGACTCTCTCCATGACCAGAAGCACTGGCCCTCTGCTCCCCGTTTCATCCAGTTATACACTGTCCTCTTTTCCCTTTTCAGACGTTCAGAGTTTTTAAGGGTATGCTATGATGAGGTCATTTTGAAGAGGActgacaaaaaaaagaaaaaaaagaaggaaaaacgTGCCAAAAAATAAACTTTCAATGGTATATTTTTCTTCTTCCTTAGTACTACCTTAGTCTAGATGTTGTTGAGCTGTTACTCAGTAATATGGTGCCATCTCCTGGGAATCTTGAGAACTACAGACATTCATTTAGCTTCACTGTCTGGACACAACCTTTTTGAAGTGGAACTGCAGACGTTTTTATGTTTTGTAAaggaatatatatataacctgaaaAATGGATTTTATGAGCTTTGCATTATTaacatttatatttatatttttgagacAAGGTATCAAAGTATTGTTTGGTTTAACTGTGATGAGTTATACCGCATGTCTAACTGATGCTGAGAGATGCTGACATGGGTTTACACacagcacatacatacacacatactataCACACACGCAGGCATGCACGTGTGCTCATATACACAGTGCAGTTTGGACTCCAGTTGCTTTCCTTGTTAGGAAAGAACCTAGTGATGGAGAACCTAGTTGAACCCCTCAGTGGGTTTACCACAGGTAGCTTATACAGATGCAAACCCATGCTACAGGACACAGAGAGCTGAGGCAGACACATCATTCACACCAATGACTTTCTCTGTACGGTCGACTTCATCTTCTTTTCTAATCAACAAAGCACAATCTACATGGTGAGACGGAGTCGTGattccttttttttttatccaggGGGATCTGGTAGACCCGCCATTGGATCAAATGATATTATCATCATTCAAAGGGGCTTTTCTTTCATTGTTGATTTTCTCCTTGTTTTCACTGTGAAGTTTAACAGGGTGGATCTATTACAGGCCATGTCTGGACCATGCCTGGCCCATCTAAACATCCCCTCCTCTTGATCCCCCAGGCATCCCAGCTCTATATCTTCTTCAAGGCACTGAACTCCACACAGAACTGTAGCCTGGGTTAAACTAATGATGAACACAATGTCAACCTCAGTAGATTCATGTTATTCAGTAGTTTAGCATTGCTGAATGAATCCTGACAGCATAGGAGGTGAAAATGTGGAAGGTCAGATCGCTAGCTAACTAGAATAATATAGTAGCGTTGACTTTGGTGCTATATATATGTACAGATTTTCGCTAGACAGTGTTACTGTGGCTATTTTAAGATACAGTTCTATGTAATCTCAGATACAGCAAGGGCATACTCAAgtgtcattttcctgttgaaatgAAAATGGTCTGTAGAGAGGGAGACACCTAGGTTACCTGCTTCTAACTAGCATCTGAGTGTCTACTCCCAAACACACCGTGCTGAAaggggtcggggggggggggggggggggggcagcagtgGGTATAGACTTGGAATAGAAGAGAGGACACACTGGCCATTGAGTAGATTTCTGGAAAAAgaacaacaataaaaataaacacgTTACGGTTAGTCGCACCATTGACAAGAACCCTTTTCACCCAGAGGCATGGTTCTCTTATCATCCATAAGGGAACATATAGAGAAGGGAGGCGGGGTAGTGAGGCTGAGGCAGGTCCAGAGACCTGAGTGCTGTGATGGCTCCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210769 lncRNA upstream 229505 76927918 ~ 76932510 (+) True G185783
TU210699 lncRNA upstream 328358 76828149 ~ 76833657 (+) False G185717
TU210701 lncRNA upstream 330541 76828149 ~ 76831474 (+) True G185717
TU210585 lncRNA upstream 480954 76680608 ~ 76681061 (+) True G185624
TU210501 lncRNA upstream 484281 76674604 ~ 76677734 (+) False mapk8ip2
TU210908 lncRNA downstream 167 77165775 ~ 77165991 (+) True G185915
TU210909 lncRNA downstream 503 77166111 ~ 77167067 (+) True G185916
TU210910 lncRNA downstream 2989 77168597 ~ 77168898 (+) True G185917
TU211769 lncRNA downstream 33361 77198969 ~ 77199174 (+) True G186716
TU211770 lncRNA downstream 34120 77199728 ~ 77200010 (+) True G186717
XM_036955942.1 mRNA upstream 2171 76863449 ~ 77159844 (+) False LOC110502025
XM_036955945.1 mRNA upstream 2171 76955558 ~ 77159844 (+) False LOC110502025
XM_036955949.1 mRNA upstream 2171 76971640 ~ 77159844 (+) False LOC110502025
XM_021572558.2 mRNA upstream 487942 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572567.2 mRNA upstream 487942 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572682.2 mRNA downstream 129479 77295087 ~ 77306466 (+) False LOC110496661
XM_021572750.2 mRNA downstream 531618 77697226 ~ 77716788 (+) False nfat5a
XM_021572757.2 mRNA downstream 536619 77702227 ~ 77716788 (+) False nfat5a
XM_036956023.1 mRNA downstream 537450 77703058 ~ 77716788 (+) True nfat5a
XM_021572799.2 mRNA downstream 611458 77777066 ~ 77780795 (+) False LOC110496763
TU210667 other upstream 1165 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 329515 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 555040 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 727400 76433817 ~ 76434615 (+) True G185462
TU210196 other upstream 992720 76167657 ~ 76169295 (+) False LOC110496459
TU212151 other downstream 611519 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 882279 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 882279 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 971905 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 1101681 78267289 ~ 78270045 (+) True G187320

Expression Profile