RNA id: TU211892


Basic Information

Item Value
RNA id TU211892
length 4275
lncRNA type intronic
GC content 0.38
exon number 2
gene id G186826
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77389713 ~ 77394282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTCCACAGAGTGCATGCTTATGTGAATGTGGTAAATACAGACCAGGGGCAACACTGTCTGTCCACAAAACAACACGATCTCTGTAGAATACCACAATAACTGTAGGAAGGTGGCGACTGTTCATCCAGATTTGACGTAAAACACACCCAAAATATGTTGCACTTGATATTTCTACAGCTGCAATATTTTGTAGTTGTTTTGTGGACGTTTGCACACTGCGAGGGCTGTTTTCTGGACAGAGGATGTGGCCCACGGTGTTCTAGACTGGGGAGGAAGGAGCAGCTCTTCTCATTGGGAGTGGGGAGCCAGAGGGTTCTGTAAACTCTCTATAAGGGAACATACAGTATCTATGCCATGATTACACATCTGTATATGTTCACATCATCTAGGGGTTCATGAGGGAAGTcagactgtagagtagagtagagagcaaCGGTCCTAAACAGTAAACATTGTAGTACATGCTGTTTGCCACAGTAAAGAGTGAGATACACCGGTAAAGAGTGATgatgagatgatgatgatgagaataGTGCTCTTGTACACAAACGTCATATACAGTACAGGCATGCACACGCTCGCAAaccccccctcctttctctcttctctttctaagAGCAGACAGCCTGTAACACTATCTACCCTACACCCTCTAATTGAGTGGGAAATGACTACTCAGAAGCTGTGTTTCTCAGTTTAACATCTCAAATCCAGCTTACAGTAGTCTGTAGTCACACTGTACTGAGACATGCCGCCCTAATGCAGCACCAGCCGGCACAGTCGGTAATTAGGAgcggcgagagggagagagggagtgcgaTTCCACAGCGtttgaaacagagagaggaagaaacagacATCAGAGAGTATTACAGCCAGAATTCAGGCGCTCAGAGGATCTTTCATGTAGCCCTGCTGCTGGCTAAAAACTGCTGTGACGTTATGAGAAGACAGGAGACTGTTCTGGAGATGACTTCTATAGACGCATGAAATACTTCTCTCTGGCTAACTGCTCTTTATCTACAAATGAGACTGGGGGGGAGGACTGGTGAGAGACTGCAGTGCAGAGCAGTTTAGTACAGTGCACTGGCAGAGCAGCAAGGgtctgtacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttcaaaggCACAGCCTCATTGAGGCTCATTTGAGCATCTGCAGCCCAAGCTGGCAGAGGCTAATACAGAGAGTCACACATATGGAGATATACCAGAACTgttccagcacacacacacactggctgtcATTAAGATCTagcaacacacacagtcacacaatgtacacacaatgtacacacagtaacacacagtcacacaatgtacacacagtcacactcagtctcacacatgtacacacagtcacacaatgtacacacagtctcacacatgtacacacaatgtacacacagtcacacacatgcacacatagtcacacacatgcacacatagtcACACAATGTACACAGTCACACAatgtacacacagtcacacacatgtacacacagtcacacacatgcacacatagtcacacacatgcacacatagtcACACAATGTACACGCAGTCACACAgtgtacacacagtcacacagtcacagaataaagtgcatgcatacatacacagacatatAGTACTCTCTCattgagcagacagacacactcatCAAACTTCCTTCTCAGTGCTGGTAGTAGCAGAGGCAGATTGAGGCGGTTTGAAACCGCAGATGAAACAACTgcatctctctgctgtctccctccctgccagCACACTGATAACTCTACACACCTCACAGGACTGGCATATCAAAGGCTCACACATGTCACTCAGTGTCAAAGAGACACACCCAGACCCACATATACGGACTTCAAAAGCAGGGTGTCAGATCATTTAGCTAACCAGTCACCCTCAGGTATCTGCTTTAGAACGTAGACGTGGAAGATGCAATATATTTACCTGCCTGCTCATCTTACTCTACTTCCAGGGTCATCTCTGTTTTAGGTGAAAGGTGGACCATCAATACATTGGAATGATTTACACCTGATCTGAGAACGCAGCTCTACAGCACAGCAGGGAATTCTGTCTGAGGGAGACAACCAAGATATGTACACAGCAGAAGGAGAgcgagggtgaaagagagagggagagagagagtgtgtgtgtgtgttatcttctTGGTGTTCAGCTCGGCCCTCCCACTACATGACCTTTTTACCCGTGTAAGAGATAAGCCTGATGAGTTTAGCATGCTAGACATTAACATGTGGaaccacccaccaccactatctatcagagagacatagagagaagaAAGGGAATGTGCTGGGCTGGTGacatgcatacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaatccctCCTGACATGTACAGTAGCCCAACAGATGTGTATAATCATGTACATTATAAATAATACCTGTACATTCTAGGTGTCGACCAACCAATGGCTCTTTCTATTTGTGTACTAGTATTTGTCAATGTAAATCCTGATTCTGATATACATAGTTTTACAGAGTTGACAGAGAGAAATGACTGGTTTTCTTGGGGTTGGTATGTTATGTTCCTATCAGACAGAACTGACCACTGCAAACTGGTGAGTGGAGAGGAAAGGGTTAATTGAGTGTAAGCCCGAGCACCTGTCCCCGAGACATCACATGAATCACCAGAACTACAAGGGGAAGGGAAGCGGGAAAAATAAAACTCTTTCACCATCACTTCAGCAATATACAAGAAATGTGACAAACCGAAGTAGCAGGGTCCTAGCCAACAAGATCTTTTCCAGACCACTTAAACACACAAACCCAACCTCTGCAATCTCTATGCTTTAAGAGCTGCAATAAACAGGTCCTAGATCAGCAGCAATAACCTGACCATGTCTGGCCTGAACCATCACTGCTCTGGAAAATAGTCCTGGATCACATTTATGTCTTCCAATTTTCAACATAATGAAAATATTTCCAAtgtctttggaaagtattctgCAATATTTAACTGTTGAACAGCCACTCTTCAATGTATTAAGAAGCAAGGTCAGAGACAAGGGAGATATTGGTGTTGAATCATTAAAGGGTAACTATACTGTACCTCAGAGTTGTTCGGTGTTGTTTTCATagtataacatgttactgtcgtGATCTCTAACCATGTCTAATCCCTCTGTGCTTGTACAGTACAGCAATACTAGATGATGCATTGTGCTATTTGTTAGCATAGGACTAATGCACcaggaagagaaaaaaaacaggtttGTTTCTGCCTCATCAAGGTTGTGCACTGTCATTCTGTCATACGAGCGTTCTCTGATAATATGCGTGTGACCCTTTTATGACATTGTATTTATGACATTGACCTGTAAATACACCCAGTACTGTGGAGCAGTCTGTTCGTGGCCCAGCCCGTCCTGTCCTGTACAAAGGAACATGTAAATAGCAAACCGCTATGCATGCTGACACTCTAGCACTTCTTTCAGGTACTTTTATAATCCCAAACTCCTCATACGGCATGTCCTGAAAATCATCTGTGAACACGGCAAATAAAAAgagaataataaaaaaaaaacaagatgtCAGACGATGACATCCTGGACAACGTGTAAAGTCCGACAGTTTTCTTACTCTTGTGGGTGGTTCACTTCTGTTCCTTTAACTGTCATTCTGTCATTCTTAATGTGGTTAAACCATTCTGGTCAAGGTTCTGTTCAGTTGTCTTGGTGTGTGAAGGGTCGAGGCAAAGCAGAGAGGCAATCTGTGTGTTAACAACTAAAGCCTGGTTAAGAGTCTGTCCACATCTGTCACAGGGCAGCATAGTCCTCTCTTGTTGTGCCGAGAGCAGACATGACTGGCTCTGGCAAAACACACAGGGGGGCACTGATTGTGATTTAACACGGTTCTGTTTTAAGGAACTAGAATTGGAACTAGGCTATATAACAAGCTTATATGATGACAGAAGATAATATGAGCAGTAAAAGAGCTTTGCCTCAGCCCTAGGACCCAGTCTGTCTGAACTAACAGTCTCACATGAAGGTCTATCTATGCCATGATGGAGAAGATGGGACTCCAACAGGACTTTGTGCTTTTGTTGATACTTTAGGAATGTTTATTTCCAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211793 lncRNA upstream 1775 77296412 ~ 77387938 (+) True LOC110496661
TU211794 lncRNA upstream 2015 77296264 ~ 77387698 (+) False LOC110496661
TU211881 lncRNA upstream 5123 77383776 ~ 77384590 (+) True G186824
TU211807 lncRNA upstream 135586 77242039 ~ 77254127 (+) True G186751
TU211789 lncRNA upstream 168342 77221119 ~ 77221371 (+) True G186736
TU211901 lncRNA downstream 12520 77406802 ~ 77408255 (+) True G186835
TU211904 lncRNA downstream 16094 77410376 ~ 77411754 (+) True G186837
TU211940 lncRNA downstream 80728 77475010 ~ 77477871 (+) False G186869
TU211941 lncRNA downstream 80728 77475010 ~ 77476567 (+) True G186869
TU211968 lncRNA downstream 111130 77505412 ~ 77537308 (+) True G186896
XM_021572682.2 mRNA upstream 83247 77295087 ~ 77306466 (+) False LOC110496661
XM_036955942.1 mRNA upstream 229869 76863449 ~ 77159844 (+) False LOC110502025
XM_036955945.1 mRNA upstream 229869 76955558 ~ 77159844 (+) False LOC110502025
XM_036955949.1 mRNA upstream 229869 76971640 ~ 77159844 (+) False LOC110502025
XM_021572576.2 mRNA upstream 715640 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572750.2 mRNA downstream 302944 77697226 ~ 77716788 (+) False nfat5a
XM_021572757.2 mRNA downstream 307945 77702227 ~ 77716788 (+) False nfat5a
XM_036956023.1 mRNA downstream 308776 77703058 ~ 77716788 (+) True nfat5a
XM_021572799.2 mRNA downstream 382784 77777066 ~ 77780795 (+) False LOC110496763
XM_036956070.1 mRNA downstream 444486 77838768 ~ 77882208 (+) False LOC110502056
TU210667 other upstream 228863 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 557213 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 782738 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 955098 76433817 ~ 76434615 (+) True G185462
TU210197 other upstream 1220418 76167657 ~ 76169295 (+) True LOC110496459
TU212151 other downstream 382845 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 653605 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 653605 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 743231 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 873007 78267289 ~ 78270045 (+) True G187320

Expression Profile