RNA id: TU211941


Basic Information

Item Value
RNA id TU211941
length 1385
lncRNA type intronic
GC content 0.36
exon number 2
gene id G186869
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77475010 ~ 77477871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctttctgtctctgtatattctctctctctctttctgtctctgtatattctctctctttctgtctctgtatattctctctctctctttctgtctctgtatattatctctctctcattctgtctctgtatattctctctctctgtctctctttctgtctctgtatattctctctctctctttctgtctctgtatattctctctctctctctttctgtctctgtatattctctctctctctttctgtctctgtatattctttctctctctttctgtctctgtatattctctctctctctctttctgactgtatattctctctctctctttctgtctctgtatattctctctctctctttctctctttctgtctctgaaaattatctctctctctttctctctctgtatatactctctatttctctctctgtatattctttctctctctttctgtctctgtatattctctctctctctctttctgactgtatattctctctctctctttctgtctctgtatattctctctctctctttctctctttctgtctctgaaaattatctctctctctttctctctctgtatattttctctatttctccctctgtatattatctctctctttctccgaaaattctctttctctgtatattctctctctctgtatattctctctctctttctctctctctctgtatattctcattctttctctctgtctcagtatattctcactctctttctctctctctgtaaattctcactctctttctgtatattctcactctctttctgtatATTCTCACGCTCTCTGTatattctcactctctttctctatattctcactctctctgtctgtatattctcattctctttctctgtctctctgtatattaccactctctctctctctctctgttctcccactcactctctgtatattctcactctctttctctgtctctgtatattctcactctctttctgtatATTCTCACACTCTCTGTatattctcactctctttctctgtctctgtatattctcactctctttctgtatATTCTCACGCTCTCTGTATATTCTCACGTTCTCTGTatattctcactctctttctctgtatattctcactctttctctcactctccctctctgtatattctcactctctttctctgtatattctcactctctctcactctccctctgtatattctcattccctttctctctgtatattctcactctttctctcactctgcctctctgtatattctcattctctttctctctgtatattctcactctttctctcactctccctctctgtatattctcattctctttctctctgtatattctcactctttctctgactctccctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211904 lncRNA upstream 63256 77410376 ~ 77411754 (+) True G186837
TU211901 lncRNA upstream 66755 77406802 ~ 77408255 (+) True G186835
TU211889 lncRNA upstream 80728 77389713 ~ 77394282 (+) False G186826
TU211892 lncRNA upstream 80728 77389713 ~ 77394282 (+) True G186826
TU211881 lncRNA upstream 90420 77383776 ~ 77384590 (+) True G186824
TU211968 lncRNA downstream 28845 77505412 ~ 77537308 (+) True G186896
TU212010 lncRNA downstream 79919 77556486 ~ 77556772 (+) True G186938
TU212015 lncRNA downstream 83470 77560037 ~ 77560947 (+) True G186942
TU212026 lncRNA downstream 116494 77593061 ~ 77594366 (+) True G186953
TU212040 lncRNA downstream 130367 77606934 ~ 77607503 (+) True G186964
XM_021572682.2 mRNA upstream 168544 77295087 ~ 77306466 (+) False LOC110496661
XM_036955942.1 mRNA upstream 315166 76863449 ~ 77159844 (+) False LOC110502025
XM_036955945.1 mRNA upstream 315166 76955558 ~ 77159844 (+) False LOC110502025
XM_036955949.1 mRNA upstream 315166 76971640 ~ 77159844 (+) False LOC110502025
XM_021572576.2 mRNA upstream 800937 76538676 ~ 76674073 (+) False mapk8ip2
XM_021572750.2 mRNA downstream 220659 77697226 ~ 77716788 (+) False nfat5a
XM_021572757.2 mRNA downstream 225660 77702227 ~ 77716788 (+) False nfat5a
XM_036956023.1 mRNA downstream 226491 77703058 ~ 77716788 (+) True nfat5a
XM_021572799.2 mRNA downstream 300499 77777066 ~ 77780795 (+) False LOC110496763
XM_036956070.1 mRNA downstream 362201 77838768 ~ 77882208 (+) False LOC110502056
TU210667 other upstream 314160 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 642510 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 868035 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 1040395 76433817 ~ 76434615 (+) True G185462
TU210197 other upstream 1305715 76167657 ~ 76169295 (+) True LOC110496459
TU212151 other downstream 300560 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 571320 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 571320 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 660946 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 790722 78267289 ~ 78270045 (+) True G187320

Expression Profile