RNA id: TU212147


Basic Information

Item Value
RNA id TU212147
length 201
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G187051
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77764649 ~ 77764849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACATGCTCCACGGTCTCTGTTTCCTTGCAAATAATCACACTTTCCTGTTGGATGCTTTCCTATCACATTTAAAGTCTTATTCAACCAtctgtgtcccacccttaatcttgTAAAAATAGCCTCCTCTTTTCTGTCCCTTCCTCTTGTCCTCCCCTCCCGACTTCCCTCTGTAATTGAAATAAATGCCTGCCCTTAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212129 lncRNA upstream 15219 77749023 ~ 77749430 (+) True G187040
TU212123 lncRNA upstream 17760 77745736 ~ 77746889 (+) True G187039
TU212110 lncRNA upstream 36249 77727277 ~ 77728400 (+) True G187030
TU212108 lncRNA upstream 38498 77725465 ~ 77726151 (+) True G187029
TU212096 lncRNA upstream 76811 77687559 ~ 77687838 (+) True G187017
TU212148 lncRNA downstream 1773 77766622 ~ 77766854 (+) True G187052
TU212244 lncRNA downstream 127975 77892824 ~ 77896154 (+) True G187125
TU212257 lncRNA downstream 152548 77917397 ~ 77917604 (+) True G187138
TU212262 lncRNA downstream 158803 77923652 ~ 77923853 (+) True G187143
TU212270 lncRNA downstream 164935 77929784 ~ 77930091 (+) True G187151
XM_021572750.2 mRNA upstream 47861 77697226 ~ 77716788 (+) False nfat5a
XM_021572757.2 mRNA upstream 47861 77702227 ~ 77716788 (+) False nfat5a
XM_036956023.1 mRNA upstream 47861 77703058 ~ 77716788 (+) True nfat5a
XM_021572682.2 mRNA upstream 458183 77295087 ~ 77306466 (+) False LOC110496661
XM_036955949.1 mRNA upstream 604805 76971640 ~ 77159844 (+) False LOC110502025
XM_021572799.2 mRNA downstream 12217 77777066 ~ 77780795 (+) False LOC110496763
XM_036956070.1 mRNA downstream 73919 77838768 ~ 77882208 (+) False LOC110502056
XM_036956064.1 mRNA downstream 87080 77851929 ~ 77882208 (+) True LOC110502056
NM_001124273.1 mRNA downstream 198652 77963501 ~ 77969044 (+) True LOC100135906
XM_021572820.2 mRNA downstream 206995 77971844 ~ 78003571 (+) False fbxl13
TU210667 other upstream 603799 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 932149 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 1157674 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 1330034 76433817 ~ 76434615 (+) True G185462
TU210197 other upstream 1595354 76167657 ~ 76169295 (+) True LOC110496459
TU212151 other downstream 12278 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 283038 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 283038 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 372664 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 502440 78267289 ~ 78270045 (+) True G187320

Expression Profile