RNA id: TU212148


Basic Information

Item Value
RNA id TU212148
length 233
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G187052
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77766622 ~ 77766854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcaatttcgaaattggatagtgcatcatcagttttcctcttgtcatgtaagtcattgcagaccttagagagctatttataacttgtcagaaacgtccagatcaactagccaaTGTCAGCTAACGGTTTTTAGCTAGGTTTTTTAGCCCATGGATTTTGTTGTAAGAGGTTTAGGAGAGAGGGCTAAAGCTTATTTCCCACaagtctacacattttgtcatggggtgtaGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212147 lncRNA upstream 1773 77764649 ~ 77764849 (+) True G187051
TU212129 lncRNA upstream 17192 77749023 ~ 77749430 (+) True G187040
TU212123 lncRNA upstream 19733 77745736 ~ 77746889 (+) True G187039
TU212110 lncRNA upstream 38222 77727277 ~ 77728400 (+) True G187030
TU212108 lncRNA upstream 40471 77725465 ~ 77726151 (+) True G187029
TU212244 lncRNA downstream 125970 77892824 ~ 77896154 (+) True G187125
TU212257 lncRNA downstream 150543 77917397 ~ 77917604 (+) True G187138
TU212262 lncRNA downstream 156798 77923652 ~ 77923853 (+) True G187143
TU212270 lncRNA downstream 162930 77929784 ~ 77930091 (+) True G187151
TU212273 lncRNA downstream 164509 77931363 ~ 77931647 (+) True G187154
XM_021572750.2 mRNA upstream 49834 77697226 ~ 77716788 (+) False nfat5a
XM_021572757.2 mRNA upstream 49834 77702227 ~ 77716788 (+) False nfat5a
XM_036956023.1 mRNA upstream 49834 77703058 ~ 77716788 (+) True nfat5a
XM_021572682.2 mRNA upstream 460156 77295087 ~ 77306466 (+) False LOC110496661
XM_036955949.1 mRNA upstream 606778 76971640 ~ 77159844 (+) False LOC110502025
XM_021572799.2 mRNA downstream 10212 77777066 ~ 77780795 (+) False LOC110496763
XM_036956070.1 mRNA downstream 71914 77838768 ~ 77882208 (+) False LOC110502056
XM_036956064.1 mRNA downstream 85075 77851929 ~ 77882208 (+) True LOC110502056
NM_001124273.1 mRNA downstream 196647 77963501 ~ 77969044 (+) True LOC100135906
XM_021572820.2 mRNA downstream 204990 77971844 ~ 78003571 (+) False fbxl13
TU210667 other upstream 605772 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 934122 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 1159647 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 1332007 76433817 ~ 76434615 (+) True G185462
TU210197 other upstream 1597327 76167657 ~ 76169295 (+) True LOC110496459
TU212151 other downstream 10273 77777127 ~ 77780793 (+) True LOC110496763
TU212344 other downstream 281033 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 281033 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 370659 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 500435 78267289 ~ 78270045 (+) True G187320

Expression Profile