RNA id: TU212244


Basic Information

Item Value
RNA id TU212244
length 2031
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G187125
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77892824 ~ 77896154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCCTGTTCTTAGTTTAATGGAGGCAAAATACAAATTACAGACAAGTAGCAACAATAGCATCAGAATGTAGGGATGAGGTGGGGGTTCAGTATGTTTTCTGTAACTTCAATCCTGAACCCTAATACGTTAAATATTAATTGTCAACATTATACATTTTACAGTTGTTGCATTTTGTGAAAAGAAAAACAAAGGGATTAACTGAATTGTGATGAAATTCTAATGTTTATGACTAGGATGTCCCCAATGAAAGAGATTGGTTTTCTTAAAGAAATACGGATGATACATCTCTTCTCATCTGACCCAAGACAAGTGGCCAGTACACTTCTGTAACAGGCTTATGTCAGTCTTATCACATGTTATGACAGTGTTTTGAAGCATTCTGACATCTGCTTAGTGCAAAGAGTCCTCGTCATTAAACCAGTAATATGCAACCAGCTCCTTCATTCTAGGACCTAGACCTTTCACTTACATCACTAGTAGCATATTGAATTGATGCACAATGTTAAGAAAATCATAAATAGATCTGTCATGTACAGAATGGACAAGATCCTCTCGTGTGGAACAGACAACCATGACCAATTTCTATATGAAACAATCAGAATGTGACCTATAGGATATTATATAACTAAGCACACAGATGAGGATAGGATATAGAATTGGGCACATGTAGTTTACTGTGGCAGGAATGGGACACCCTGTGTAGGTTGATGAGTAGCCTCTTAATGATGACAATTGTAAGAGAGAAAAATCCTGGAGCACTCCCAATGTGCTGCTCCTGAGTTAGTGATCACACAGGCTGAAAACCAAAAACACTGTCTGCTAGCCAGTCTGAGTATGTAGGTGCACTCATCTAGCCTGGATATCAGACAGTGATTTCTGCATTTCTGCTTTAGACCAAATTTACATAAGAACAACGACAAAGGAGTTGGCTACAGCAGAAACAGCCAGACACCCAGGCTAGATGAGTCCACCTGCACACTGCACTGAGAATACAGACAGAGAGGtcaatggcagccatattggataGGTCTGGATGAAACCCACTAACTGATCCTTGGGAAGGAGTGATCATGTGGTGGTCCTGATGGTAGCTTCCAACCCCCAAAATGTAGAAAGTCAACAAGTGAAATTGGATCTCAAAGTGCGATTCCTTATTGTGGTAATGACTCCAGAAACAGTGGGCCGTGCACTAGAACCAGAGAGCTTCTCTGAGAGCAAGGGGAGGGTAAAAAGCTGTGCCTGTCAAAACAGTGATTCACACACTTAATCAAATATAGAACAATTCTGAGAATTAAAAATCAAACTAGAGTGGGGGGTGGCCGGGTTACTGAGTATAAACATTCCATCCCTGTCTCCGTCATGACAATGACAGTCTGACACTCTTGTCTTCCCATGGTGCACTGCTCTCTGGTCTCAACCCATCAGTTCTATCAGGGTTGGGTCAAAGGTAACCTAAAGTAGCAGGCGCATGAGCTGAGTCCCCACATCCGTTTTTAAGGGGAAACGGAAGTTCTGTTGAAAATATTGTATCCCTGAAAAACTGAAAAATCCGCTTTCTGCCTACCCCGCGGATAGTGGGTCAACGGTCGATGAGAATACGACCCAGACCACAGCAGAGGGAATTTAGGATCCGGGGAATGCTGCACTCCTTTCTGGGTAAGAGGGGGTAatattgtggttgtggtggtggaggtaaAGGTGGAAGTGGTGGTAGAGGGGGACTATGACTGAGTTATAAAGAATATCTAGACAAGGGAGACATTTTAACACTTCACACCGCAGCTTCTCATACATATAATCCATAAAAATCCTTGTTTAGTAATAAAAAAATGGCCATGTTTATATGTATATAATAGTCTTTCTGCTCTTTAGGAAATTATAGTCCGTGTGTGTGAGGGGAGTGGGGGTTGTCTCCCCTTCACTACAACTCCATGTCCTGAGCCTCATCCTCGGAGAAGTCTGACATGGAACTCTCAGATGAGGAGTCGcctccctcctcctgctcctttaGAGCCTCCTCTGTCGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212148 lncRNA upstream 125970 77766622 ~ 77766854 (+) True G187052
TU212147 lncRNA upstream 127975 77764649 ~ 77764849 (+) True G187051
TU212129 lncRNA upstream 143394 77749023 ~ 77749430 (+) True G187040
TU212123 lncRNA upstream 145935 77745736 ~ 77746889 (+) True G187039
TU212110 lncRNA upstream 164424 77727277 ~ 77728400 (+) True G187030
TU212257 lncRNA downstream 21243 77917397 ~ 77917604 (+) True G187138
TU212262 lncRNA downstream 27498 77923652 ~ 77923853 (+) True G187143
TU212270 lncRNA downstream 33630 77929784 ~ 77930091 (+) True G187151
TU212273 lncRNA downstream 35209 77931363 ~ 77931647 (+) True G187154
TU212305 lncRNA downstream 100566 77996720 ~ 77999680 (+) False fbxl13
XM_036956070.1 mRNA upstream 10616 77838768 ~ 77882208 (+) False LOC110502056
XM_036956064.1 mRNA upstream 10616 77851929 ~ 77882208 (+) True LOC110502056
XM_021572799.2 mRNA upstream 112029 77777066 ~ 77780795 (+) False LOC110496763
XM_021572750.2 mRNA upstream 176036 77697226 ~ 77716788 (+) False nfat5a
XM_021572757.2 mRNA upstream 176036 77702227 ~ 77716788 (+) False nfat5a
NM_001124273.1 mRNA downstream 67347 77963501 ~ 77969044 (+) True LOC100135906
XM_021572820.2 mRNA downstream 75690 77971844 ~ 78003571 (+) False fbxl13
XM_036956097.1 mRNA downstream 151219 78047373 ~ 78066844 (+) False LOC110502077
XM_036956103.1 mRNA downstream 151295 78047449 ~ 78066844 (+) False LOC110502077
XM_036956099.1 mRNA downstream 151297 78047451 ~ 78066844 (+) False LOC110502077
TU212151 other upstream 112031 77777127 ~ 77780793 (+) True LOC110496763
TU210667 other upstream 731974 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 1060324 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 1285849 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 1458209 76433817 ~ 76434615 (+) True G185462
TU212344 other downstream 151733 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 151733 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 241359 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 371135 78267289 ~ 78270045 (+) True G187320
TU213209 other downstream 588670 78484824 ~ 78506932 (+) True LOC110496993

Expression Profile