RNA id: TU212270


Basic Information

Item Value
RNA id TU212270
length 308
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G187151
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77929784 ~ 77930091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATCATAATGAGATTAAACAACTGCTTGCtacttgcctgtttgtgtgtgacaagaactgagtaacatggtgtgacctgcatgttgcaaaactgtagataacagcccagcagatgctttgtccttgtgtttgtatgtaacaatattgagcacatggtgtgacttgctgtatcttacaaagttgttatagggaggggtggtcatcatgaggtttaactgagatggaaaaatactgaacaacacaatagcagGAACTGAGCAACTGTTATAACTAGGGGGTGCTACCAGAACAGTAAGGATCTATACATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212262 lncRNA upstream 5931 77923652 ~ 77923853 (+) True G187143
TU212257 lncRNA upstream 12180 77917397 ~ 77917604 (+) True G187138
TU212244 lncRNA upstream 33630 77892824 ~ 77896154 (+) True G187125
TU212148 lncRNA upstream 162930 77766622 ~ 77766854 (+) True G187052
TU212147 lncRNA upstream 164935 77764649 ~ 77764849 (+) True G187051
TU212273 lncRNA downstream 1272 77931363 ~ 77931647 (+) True G187154
TU212305 lncRNA downstream 66629 77996720 ~ 77999680 (+) False fbxl13
TU212304 lncRNA downstream 71865 78001956 ~ 78002905 (+) True fbxl13
TU212347 lncRNA downstream 129277 78059368 ~ 78066821 (+) True LOC110502077
TU212353 lncRNA downstream 141151 78071242 ~ 78073026 (+) True G187221
XM_036956070.1 mRNA upstream 47576 77838768 ~ 77882208 (+) False LOC110502056
XM_036956064.1 mRNA upstream 47576 77851929 ~ 77882208 (+) True LOC110502056
XM_021572799.2 mRNA upstream 148989 77777066 ~ 77780795 (+) False LOC110496763
XM_021572757.2 mRNA upstream 212996 77702227 ~ 77716788 (+) False nfat5a
NM_001124273.1 mRNA downstream 33410 77963501 ~ 77969044 (+) True LOC100135906
XM_021572820.2 mRNA downstream 41753 77971844 ~ 78003571 (+) False fbxl13
XM_036956097.1 mRNA downstream 117282 78047373 ~ 78066844 (+) False LOC110502077
XM_036956103.1 mRNA downstream 117358 78047449 ~ 78066844 (+) False LOC110502077
XM_036956099.1 mRNA downstream 117360 78047451 ~ 78066844 (+) False LOC110502077
TU212151 other upstream 148991 77777127 ~ 77780793 (+) True LOC110496763
TU210667 other upstream 768934 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 1097284 76830413 ~ 76832500 (+) True G185718
TU210492 other upstream 1322809 76534378 ~ 76606975 (+) True G185549
TU210392 other upstream 1495169 76433817 ~ 76434615 (+) True G185462
TU212344 other downstream 117796 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other downstream 117796 78047887 ~ 78048800 (+) False LOC110502077
TU212400 other downstream 207422 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 337198 78267289 ~ 78270045 (+) True G187320
TU213209 other downstream 554733 78484824 ~ 78506932 (+) True LOC110496993

Expression Profile