RNA id: TU212353


Basic Information

Item Value
RNA id TU212353
length 1785
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G187221
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78071242 ~ 78073026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CggccagtgaccaaaacatctctgtttaatccattttaaattcaggatgtaacataaaatgtggaaaaggtcaaggggtgtgaatactttatgaaggcactgtaaggctctggtctgtccaataagtgagggtaaacggtagacatgttctctgctatccactttgttttaattattatttttggtATAGGGCCATTTTGTTTTTTTCAGCGTTCAGGGAGGGTTTATGTCAAATATATTTTTGCTGCAGTGAGGTCCGCTTTTCTCCATGTAACCGTTATTTTAAATAATGTTCACTCcctaactagggctttacaacgATGGTAAAAACTGAGATTTTGGGGaaaagtgggttaaaatcttcctggaAGTCACAGAGGGACATGTAaaaatgctgaattttggcactttagcaagtctttattcaaaTAAAAACATCTGATTTATTTAATTCtctgtggtctatattaaagggaacTTCATTGAATATAACAGTCTTTAATTTCAGGCTTTGAAAatgtctacttaaaatatcaaaggaacGCAAAAGGCACTCATTTTGTGGAACGACCCCAGTAACAGTACAAGTCCTGTCCCTGAGTCACCAAGACCTACAGTTACAACACCCCGGAGGGCAGGCaatccctccctccatactctCTGGATTGGGTCAGATTACCAGTTATGTAATTCACTTCATTTCACACTGAGCCGTGTTCCAAACCATAGAAAATGTACACCTTCTCCCTTCTTTGAGGTAGTCACTGATCTGCATGTGATTGGATAAATGAATGCAGGGACATACTGTTGTATAATCAGTCATTCTGCTTTCACCAATCCAACCCAGGCAGATATTTGAAAACTTCAGCAAAGTAGAGACATTTTATGGTTTGTGTGTTTCTTCATGGTCTCCAGGGGAAAACATATCCCTATCACACTTAAAAGAAACATATTCAATACCAATGTTCACATATAAACCCATTGGACCTAACGGTCCCAGTTATCAGAGAATAACACAGGCACATGCACAgaccagtcagtctgtctggagaGCAAGGGTTCGAGTCTGCTTACGAATTCTCTGAATTCTCAACCAACAAGTCTCAAATATCACACGGCAGAAAAATTATTCACTGGAGCATCAATTGAGTCCCACACATATATTTGAAAAACAATGAAAAGTTTGTTAACAAAATGACAGTAAACAGCACAAAATGTCATTcagttaccaaactttgcatttgCATTGTTCTTCGAGTAAATGTATTTTTGTAACATTTTCTGAAGAAACAGGAAAAAGTTTCTGCACGCTCCCAGTCAGATGCAAATGTTTTTAATTATAGCTGAGCAATAACAAATCAGCTATGGATCAGCTGTGGAATAGTCCCAGTCTTGACTTCAGTCCACCACACTGAGCCAGATGTCCGTCAGCCTCTCCAACCGGGCGCACAGCGTCAGACAGAAGCCCAGTTTCAGCAGCATTGCCACCAGGTACAACACCCTCTGCCGCAGGTTCTGCTGGTCGTCCCGTGGGTCATAGCCAGGCTTGCACCGACCCGCCATCTTCACCACCAGCATGAGGATGAGAATGGTGTCAAATGTCCATACAGGGAAGAAGATGAGGAACCAGTTCCAGTGGATCTTGGAGTCCAGTTTGAGGACCAGCATGATGAGGAATATGAGGGTGAAGGTCCATGACAGTAGGACTCTCTGGGCCAGAGACATTCTCATTTAAGTGAGGGGTGGCCGCCTGGAGGGTGTACGTTAACCGTGACACTGGCAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212347 lncRNA upstream 4421 78059368 ~ 78066821 (+) True LOC110502077
TU212304 lncRNA upstream 68337 78001956 ~ 78002905 (+) True fbxl13
TU212305 lncRNA upstream 71562 77996720 ~ 77999680 (+) False fbxl13
TU212273 lncRNA upstream 139595 77931363 ~ 77931647 (+) True G187154
TU212270 lncRNA upstream 141151 77929784 ~ 77930091 (+) True G187151
TU212354 lncRNA downstream 329 78073355 ~ 78073712 (+) False G187222
TU212355 lncRNA downstream 392 78073418 ~ 78073712 (+) True G187222
TU212409 lncRNA downstream 75300 78148326 ~ 78152909 (+) False G187268
TU212410 lncRNA downstream 75300 78148326 ~ 78149583 (+) True G187268
TU212483 lncRNA downstream 197450 78270476 ~ 78270781 (+) True G187333
XM_036956097.1 mRNA upstream 4398 78047373 ~ 78066844 (+) False LOC110502077
XM_036956103.1 mRNA upstream 4398 78047449 ~ 78066844 (+) False LOC110502077
XM_036956099.1 mRNA upstream 4398 78047451 ~ 78066844 (+) False LOC110502077
XM_021572820.2 mRNA upstream 67671 77971844 ~ 78003571 (+) False fbxl13
NM_001124273.1 mRNA upstream 102198 77963501 ~ 77969044 (+) True LOC100135906
XR_002469614.2 mRNA downstream 160877 78233903 ~ 78260259 (+) False LOC110496871
XR_002469615.2 mRNA downstream 160878 78233904 ~ 78260259 (+) False LOC110496871
XM_021572888.2 mRNA downstream 160878 78233904 ~ 78266800 (+) False LOC110496871
XM_021572895.2 mRNA downstream 160878 78233904 ~ 78266800 (+) False LOC110496871
XM_021572904.2 mRNA downstream 160878 78233904 ~ 78266800 (+) True LOC110496871
TU212344 other upstream 22442 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other upstream 22442 78047887 ~ 78048800 (+) False LOC110502077
TU212151 other upstream 290449 77777127 ~ 77780793 (+) True LOC110496763
TU210667 other upstream 910392 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 1238742 76830413 ~ 76832500 (+) True G185718
TU212400 other downstream 64487 78137513 ~ 78177583 (+) True G187260
TU212466 other downstream 194263 78267289 ~ 78270045 (+) True G187320
TU213209 other downstream 411798 78484824 ~ 78506932 (+) True LOC110496993
TU213267 other downstream 506346 78579372 ~ 78580062 (+) True LOC110497055
TU216437 other downstream 2682115 80755141 ~ 80756647 (+) True G191052

Expression Profile