RNA id: TU212409


Basic Information

Item Value
RNA id TU212409
length 2863
lncRNA type antisense_over
GC content 0.33
exon number 3
gene id G187268
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78148326 ~ 78152909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACTGGTCACAAGAGCCAGAGAGGACAGGAATCCAAGGGTACAACATTAAATAACTTAGTGATATGTCATTTTGTCAGGATAATCTTTTAACCACTTGAGGATAAATAACATATTTACTGTTAATAGGATGACTAGTAGCTTATGTGTGAGCATGTGCTGTACAGTGGGTTGTGTTGTAAGTAAGCCCAAGGTCTAAAACCAGTTAGCATGCAAAATTCAGGAAACACATATGGATACATTGACAACTAAAATATGTGCCTGTGACAGCGGTGAATGGCAATTAAAGATCGGCACTTTGTGTGGACTCACTTACAGCAAGGCAAagattaacaacaaaaaaaagcagGATCTCAGTTTTCCAAATATCAAAAACACTGTTTTTCTAAAGTCAGTAACAACCATCCTCAGCATGCAAACAACTCCATTCCCCCTCGGTTCCTATAGAACTTCAAACATAGCATATTCTGCAATGCAGTAACTTAATATTCTCTAGAGAAGTGAAAGTAGTTATTCAATCCAGGACTGGGTAGGTGAGAAGGGCACTGTAGTGAGTGGAATGGTACCATTCATGCGAGGTGACAAAGAAGCAAGATAATGGTAccaatgagggaaaaaaacaagacAACGGTTTAGTTCTCCTTTTCTTAAAATAAGTGATGCTATGCAATACTGTACTGATTACATTCATTCAGAAAACCTACTAACAGACTAATCTTACCCAAATCTACCTTTGACAACCAATATAAGATACGCagcttacacacaaacacaaatgccATTGGTGACGACAGAAAATAACTTGTCTTCATACAACCCTGTGTGCTCTGCATTCAATTAGACAGTCTTGTGTTGGTATACGACTGTCACCTATACGACTGTCACCTGCCTCTTCTGACACTGACTTGTTAAGGTATGTAAAACTTCCTCTTAACCTCCACATTAGACATTTACCGATGTCTGAGGACGTTTCTGATGGATGTCATTGGTTGGTAATAAAAACAGGTCTTTCAGTCACTGGACTTTAAGCCATCAGAACCACAGGCCTAGGTGATTACGGTGGAATTTCTCTCAGTAGTGAGAATGCAAGGCACTAAAAAGAGTTCTGCAAGTTTTTACTGTTACTGTGTGGGGGTGGGTTACAGCAAGACATAGAGTACTCTATGATGAGCATTATGTGAAAGCATAATTTAATACGAaacatgtactgtgtgtgtgtgtGTCTGTGTGTGAACACCATGCACCGTTCACTCGCAAGATGACCCTATGTATCAAGAATGTAATTCCTTTCTAACAGAACTGTACCAAGGACCATAGCCTTGCTTAGCAGAGTCTGACTACAGTACACCAGGTGGTGAGGTGTGAGACAACTGACTGACACAGTAGCTAAGGTCGAAAACCAAATGATCACAGTAGCTGAAGCCAACAACTCAAACCACTGAGCCTAACCAGTCGCTAAGGCGTAAACCTAAAACACTCATGGATACAGTCACTTCAGGGTAAATCCAAAGCCTGGACAAGACAGGTGAAGTAGGTATTAATAAACTATCTACAGACAGGTCTGTTACTTAGCTCACACTAACATTAGGTGATGGTCTCATAAGAAGCTAACACACCCAGTCAGGCAGAACATCACATCAGACCAGCTCAGAGGGACAGATAATCAAATATAACCATAACTTAGGACAAGAAATATCTCTATATACAAAGACAATGTGTATGTGTTTGGGGGTTTAAGGCCACTCTTACACAGGGGGCTCACTCCTTTCCTCACATTGCTATTACTGCATGGTGATCAAATGAGTAACACTAGCCAAACACTATCCACTATAACCCTACCTAACCAACTTCCATTCACTATCTTTCTCTCATTCCACCTCCTTGCTTCTCTACATATCTTACTCTCCTTTCATTATACAAACTTGTTACCCACAATTAATCAGTTTCTCATACCATTCAATGCCTCAATCTCAGCCAATCACAGTAGTGCTAGGAGGcgcatgtgtatgtgtttgtggggGTTCTCTCCATCTGCTAACTCTGTCCTAGGTAAGCTTAAGGCCAGTTACAGTCAAGAAGTGATTAAGACTTCCCCCACCCTACCCTCCTGTTTAAGGGAATGATGAGATCACAATGGTGCTTTCAACAGATGTCTTTGGCCATTGCCAGTTGTGCCCTTGGGTCCATAGCTTTCATTGGACAAACCCAAATGTCAATCACAGCCTGCTTCCACAGCCATTGGCAGAAAAGACTGGGCCCTGGTACGGGTGAAGGTGTGATTGTGTGCTGTGGGTATGTATTGCACTCTCCCTCCAACTGACAGACATCACTCTCTGTCTGACAGGACTGAAccacagcctcctctcctccattttcACTTCATCCTCTTTATTTCACCTCACCAATTAGTGAAATAGAACGTCAGATAGCAGTTGTCCTCCTATggctctcttcctccctgccccCAGTTCCTATCAGCCCAGCCTTACTAACCCAGGTCCAGGGCTGCAGACTGGGCTATGTGGGCCTCAGGTTGGGACCTCCAGGGTTGCTAACAGGTTTCTGGGTGGCTCCCATGTGGAAGGCCTGCTGAAGGGGGGCTGAGGCCACGGAAGGGGCCTGGTACTGGGCCAGGAGACCCACCTGACAGGGTCCTGCCCACTGGGGGGCGCTGTAGGGGGCTGTGCCATAGCCAAATCCCTGGGGAGGGGGGCCTAGAGAGCCCTGACGCTGGCAGAGTGGGTTGGAGGGGTTAGTGGTAATGGGGAGGTGGGCACCTGCCAGGGTGGTAGACGGGAGGGTAGGGCACAGGTGGCCGGGGGCAGAAAACTTTCGGCTCATGTTTGCTTGTGGAGGGATATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212354 lncRNA upstream 74614 78073355 ~ 78073712 (+) False G187222
TU212355 lncRNA upstream 74614 78073418 ~ 78073712 (+) True G187222
TU212353 lncRNA upstream 75300 78071242 ~ 78073026 (+) True G187221
TU212347 lncRNA upstream 81505 78059368 ~ 78066821 (+) True LOC110502077
TU212304 lncRNA upstream 145421 78001956 ~ 78002905 (+) True fbxl13
TU212483 lncRNA downstream 117567 78270476 ~ 78270781 (+) True G187333
TU212486 lncRNA downstream 119424 78272333 ~ 78272606 (+) True G187336
TU212488 lncRNA downstream 120801 78273710 ~ 78273909 (+) True G187338
TU212491 lncRNA downstream 123754 78276663 ~ 78277026 (+) True G187341
TU212493 lncRNA downstream 126809 78279718 ~ 78280007 (+) True G187343
XM_036956097.1 mRNA upstream 81482 78047373 ~ 78066844 (+) False LOC110502077
XM_036956103.1 mRNA upstream 81482 78047449 ~ 78066844 (+) False LOC110502077
XM_036956099.1 mRNA upstream 81482 78047451 ~ 78066844 (+) False LOC110502077
XM_021572820.2 mRNA upstream 144755 77971844 ~ 78003571 (+) False fbxl13
NM_001124273.1 mRNA upstream 179282 77963501 ~ 77969044 (+) True LOC100135906
XR_002469614.2 mRNA downstream 80994 78233903 ~ 78260259 (+) False LOC110496871
XR_002469615.2 mRNA downstream 80995 78233904 ~ 78260259 (+) False LOC110496871
XM_021572888.2 mRNA downstream 80995 78233904 ~ 78266800 (+) False LOC110496871
XM_021572895.2 mRNA downstream 80995 78233904 ~ 78266800 (+) False LOC110496871
XM_021572904.2 mRNA downstream 80995 78233904 ~ 78266800 (+) True LOC110496871
TU212344 other upstream 99526 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other upstream 99526 78047887 ~ 78048800 (+) False LOC110502077
TU212151 other upstream 367533 77777127 ~ 77780793 (+) True LOC110496763
TU210667 other upstream 987476 77147653 ~ 77160850 (+) True LOC110502025
TU210702 other upstream 1315826 76830413 ~ 76832500 (+) True G185718
TU212466 other downstream 114380 78267289 ~ 78270045 (+) True G187320
TU213209 other downstream 331915 78484824 ~ 78506932 (+) True LOC110496993
TU213267 other downstream 426463 78579372 ~ 78580062 (+) True LOC110497055
TU216437 other downstream 2602232 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 2612423 80765332 ~ 80766714 (+) False G191057

Expression Profile