RNA id: TU212466


Basic Information

Item Value
RNA id TU212466
length 2757
RNA type TUCP
GC content 0.45
exon number 1
gene id G187320
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78267289 ~ 78270045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTATTAATAAATATCACTATTGTATGAATATAAACATTTTAAATTAGCCTTAACACTCCAATATCTTTCCTTGGAGGCTTTACAGGAGAAAATATGTAGGTTATTGATATGTTGCATACAGAAATACATATTCTTGATAACCACGGACAAGATAAAGGGCTTTATTCAATCTATCGCTGAAGCATTAAATTGCTAAAAGATTTAAAGGTTATTTCCGATTGCGCCGACAtttgcagcgtttaccgtgaatgcagtctccactaACGTGGGAACAGTGCCTTGAAATTTCAATCATGCTGTAACAACTTCCGCGATAAAGATTGAATTGAGCCCAAAGTCTATTTCCACTCTCCATTCTAAAGTCCCCAGGAGGAAAAGGCAGTTTACCCCTGTCATATCCACACTGTTCATGTTGACAAGCTGGAGTAAGGCATATTACAATGTTTGATACAGTGTAACTCCTCAGGAATGGGAACTACcaattaaaaaacaaaacacttcAATTTGAAGTACAATGTTCTGGACTACAGCCATTCATAAAAAATACCTTCATCAACATAAGCAAAATACTTCAGCTGAAGAAATCCCCTGCTCACACCTTCAATCCAAGGCCTTAACGCCTTTGTGCAGTGTTAGGGACTGTGTTTGAACAGAGATATTTTGCATGAGTCATGTCTATCATCAATACTGGTAAACAGTTAAAGGGAAAGTTTAAAAATGAGTTTGTTTTGCATGGAAAGATGctgtgtagtgtggttgtgtCCCAGACAGTACAGTTTCTTGAATGGATGAGGTAGCTAGTCAAAACCTTATAGATGTGATACAGGGACAGGATAGTTAACACTGAAATAAGAAAGCAATTTTACCAAAATAAGGGGTGGAATATTGCTGTGACAGTGAATGTTTAAAAAGTGTTTCCTTCTGCTAAAATTAAGTCACAGTATTGTAGCTATTAAAGATAATGTAATAGTCTACGAGCTGTTCCGCTCAGGTAATCTCTGTGGATGAAAAATATTACAGTGAAAACCCCACTTGGCAGTTCATCCCAGTTTGGCTTTCACCTAACTTTCTCACTCTCCGTCATCTGCCAGAGTCCCAGGTTTAAAACTTTAAGGCACGGGAGCTGCGTTATCCTCTCCAGGCCCCGCTTGGTGATTTTGGTACACCCATACAGGTCGATACCAGTGAGCTGCGTCAGGTGGTCAGCAATCAGCTCCAGCCCCTTGTCAGTGATGCGTACACACTGCCCAATGTTCAGCGTCTTGAGCTCGTGCATCTGGCGCACCATCCGGTTGATCCCGTCGTCACTGATGTGGCAGGAGCACAGGGACAGAGACTTGAGCTGGTACAGCCCCTGGGCGATGTAGGCCAGGCTCTGGTCACCTATCTTGTCGCAGAAGGAAACGTCCAGGCCAGAGAGCTGCAGAGACCCCATGGCCAGGTGCATGATGCCCATGTCACTGATGTTGTCACAGGACCGCAGGTTGATGCTTGACAGGTGATTCATGTTCGACAGATGGATCATACCTGCATCCGATATGCCTCCGCAGAAGCTGAGGTTGAGCACCTTGAGCTTGGCTAGTCCCTTGGAGACGTGTTTGAGGGACAGGTCTGTCAGTTTCTGGCAGTCCTGTAGTGTCATCTGCTCCAGGGAAAGGCAGCCTTCGGCAGCGCTTCGGGTCATCCCAGCCAGGTGACCAATGCCGACGTCTGACACATGCCTGCAGCTCCGCAGGTTAAGGCTCTTGAGTTTGTGCAAGCCCCAGGCAATGAGAAGAAGGCCTGTGTTGGTGATGTTACTGAGGCCTCCAAGTTCCAGCACCTCCAGGTTTTTGAGATACTGGGCAATCCTACCCAGGCTTGAGTCTGTGATTGGTTTGCAAAGGCTGAGGTTGAGGATTCGCAAGGACGGGATGTCTTGAATAAACGCATGTCCGAGGCCGTTGTCCGTGAGGTTAAAACAGCCACATAGGTTAAGGCTTTCGATGTTTGGCAGCCCCTGGATTACATAGCTTAGGCTTCGTCGCAAGCTTAGGATCTGGACCTTCCTAATGCCTCGGGTATGGAGGCTGGGGAACAGGGACGGGTTGGCCCTCCGCAGATGCAACTTCGCTTCCACCCCCCTCCACACAGACTTGTGATACGAAGCGTCCCTCCAGGCCGCACACACTTGGGCAACCCTACCTTTGTCCCTTACGTCCAAGTAACTGAAAATTATAGCTAAAATTTCCGGGAAGAGGCCAGATATGTGCGTTTCCATTTCAAACATGTTTGGAAAGGGAGAGGTTAGATAAAACTAACCAGGTATCCGCTTATTCGAGTAGGCTAgctaactgttagctagctaaattaggtAATGTTACTCAGGAAAATAACCTGTTCAAAGTCCAACCATCTCTTCATAATGCATATCCAACAAGAAGTGTGGAGGTTGTGTTATAATAGCTAGGTTATAATTATTCTAATCAAatgagatagctagctagctacgtccTACAAAAACTTgggatagctaacgttagttagcgtaCTTAAAGGCGGAAAACAGTGACGGTCAGGCGACTCTACCCAATTTCAAGTCAGATGACCGCTGTCGTTCTTCAAACGGATCCAGTCGGTCGTTCATTTTCAAAACAAAAAGTAGAAATGTATTGATGAAAACCGCAGTCTCTGTTTCTTCTGTGTCATCGATTAAAATACGTTTCTATTAGCATTTCGGTTCTGTTGTGGGATTCTTCCTGTGCTGCCTTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212409 lncRNA upstream 114380 78148326 ~ 78152909 (+) False G187268
TU212410 lncRNA upstream 117706 78148326 ~ 78149583 (+) True G187268
TU212354 lncRNA upstream 193577 78073355 ~ 78073712 (+) False G187222
TU212355 lncRNA upstream 193577 78073418 ~ 78073712 (+) True G187222
TU212353 lncRNA upstream 194263 78071242 ~ 78073026 (+) True G187221
TU212483 lncRNA downstream 431 78270476 ~ 78270781 (+) True G187333
TU212486 lncRNA downstream 2288 78272333 ~ 78272606 (+) True G187336
TU212488 lncRNA downstream 3665 78273710 ~ 78273909 (+) True G187338
TU212491 lncRNA downstream 6618 78276663 ~ 78277026 (+) True G187341
TU212493 lncRNA downstream 9673 78279718 ~ 78280007 (+) True G187343
XM_021572888.2 mRNA upstream 489 78233904 ~ 78266800 (+) False LOC110496871
XM_021572895.2 mRNA upstream 489 78233904 ~ 78266800 (+) False LOC110496871
XM_021572904.2 mRNA upstream 489 78233904 ~ 78266800 (+) True LOC110496871
XR_002469614.2 mRNA upstream 7030 78233903 ~ 78260259 (+) False LOC110496871
XR_002469615.2 mRNA upstream 7030 78233904 ~ 78260259 (+) False LOC110496871
XM_021572942.2 mRNA downstream 78035 78348080 ~ 78352645 (+) False LOC110496927
XM_021572938.2 mRNA downstream 78036 78348081 ~ 78352645 (+) True LOC110496927
XM_036956224.1 mRNA downstream 124063 78394108 ~ 78451563 (+) False lrrc56
XM_036956238.1 mRNA downstream 124064 78394109 ~ 78451563 (+) False lrrc56
XM_021572971.2 mRNA downstream 124066 78394111 ~ 78451563 (+) False lrrc56
TU212400 other upstream 89706 78137513 ~ 78177583 (+) True G187260
TU212344 other upstream 218489 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other upstream 218489 78047887 ~ 78048800 (+) False LOC110502077
TU212151 other upstream 486496 77777127 ~ 77780793 (+) True LOC110496763
TU210667 other upstream 1106439 77147653 ~ 77160850 (+) True LOC110502025
TU213209 other downstream 214779 78484824 ~ 78506932 (+) True LOC110496993
TU213267 other downstream 309327 78579372 ~ 78580062 (+) True LOC110497055
TU216437 other downstream 2485096 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 2495287 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 2495687 80765732 ~ 80766714 (+) True G191057

Expression Profile