RNA id: TU213216


Basic Information

Item Value
RNA id TU213216
length 225
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G187985
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78454561 ~ 78456189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctatatgtttagaactacaaatgaacttctGTCGATTCTTTgttaattttattttttatgtcacaattccaaccctcctcctttatccgggcttgggaccggcaaatgtgacccaaaagagacacttcgtttaaaaaatatatatatttttaggttaattttcttaatttggtttttaaccttaggGTCCACTTAGGGgcctacaacaagtcacagtaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213128 lncRNA upstream 84962 78366133 ~ 78369599 (+) False G187919
TU213130 lncRNA upstream 84962 78366133 ~ 78369599 (+) False G187919
TU213132 lncRNA upstream 84962 78366133 ~ 78369599 (+) False G187919
TU213133 lncRNA upstream 84962 78366133 ~ 78369599 (+) True G187919
TU213111 lncRNA upstream 100645 78339166 ~ 78353916 (+) True G187904
TU213252 lncRNA downstream 72874 78529063 ~ 78529333 (+) True G188020
TU213255 lncRNA downstream 78525 78534714 ~ 78534946 (+) True G188023
TU213262 lncRNA downstream 102565 78558754 ~ 78559351 (+) True G188030
TU213263 lncRNA downstream 103819 78560008 ~ 78560213 (+) True G188031
TU213274 lncRNA downstream 117370 78573559 ~ 78573771 (+) True G188042
XM_036956224.1 mRNA upstream 2998 78394108 ~ 78451563 (+) False lrrc56
XM_036956238.1 mRNA upstream 2998 78394109 ~ 78451563 (+) False lrrc56
XM_021572971.2 mRNA upstream 2998 78394111 ~ 78451563 (+) False lrrc56
XM_036956242.1 mRNA upstream 2998 78394113 ~ 78451563 (+) False lrrc56
XM_021572950.2 mRNA upstream 2998 78403373 ~ 78451563 (+) False lrrc56
XM_036956284.1 mRNA downstream 11510 78467699 ~ 78519071 (+) False LOC110496993
XM_036956288.1 mRNA downstream 11510 78467699 ~ 78519071 (+) False LOC110496993
XM_036956271.1 mRNA downstream 11511 78467700 ~ 78519071 (+) False LOC110496993
XM_036956278.1 mRNA downstream 11511 78467700 ~ 78519071 (+) False LOC110496993
XM_036956251.1 mRNA downstream 11513 78467702 ~ 78519071 (+) False LOC110496993
TU212466 other upstream 184516 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 276978 78137513 ~ 78177583 (+) True G187260
TU212344 other upstream 405761 78047887 ~ 78048800 (+) False LOC110502077
TU212345 other upstream 405761 78047887 ~ 78048800 (+) False LOC110502077
TU212151 other upstream 673768 77777127 ~ 77780793 (+) True LOC110496763
TU213209 other downstream 28635 78484824 ~ 78506932 (+) True LOC110496993
TU213267 other downstream 123183 78579372 ~ 78580062 (+) True LOC110497055
TU216437 other downstream 2298952 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 2309143 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 2309543 80765732 ~ 80766714 (+) True G191057

Expression Profile