RNA id: TU213645



Basic Information


Item Value
RNA id TU213645
length 685
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G188376
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78711046 ~ 78711829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTGAATCAGAAACACTTTATATTACTTTCAATGTACAGAATATATTTCATTACAAACAAAAAGGTGGTGTCATTAATAAATGATAAACATGAAACAAGTGTCCAACAGGGTGGAACAACAAATAAGTAATCACTGTCACAAACCAAACAGATATAGTGACGTGAAAAGTGTAACAGTGTTGTAACTGAAACGCAACAGACCAGGACTTTATTCATTagtgcaaaacgttttgcaacggaaaagaAAAACACTTTTTATTGGACAATTTCAGGTAGTCATCCCTGTTTCAGCCTGTTTGCTTCTGATGGTTCCTAGTGAATAAAACCCAGCTGTGAGCAGATTCATCCTGAGACTGAGTATCATTCTCCAGTTATCTAGTGATGAACAGGATTTCCCCCTTTTTATAAGAGTAATACTACTCTTCATTCTTTAGTCAGCTAGGTATCTGAAACAAAACGAGGCACAACACTGTTTTTGGATAGGACTTTGGAGAGTAAGGCTTATCTTCTGGGTTTTATGGGGATGGTGAGTGATAATCTTTGGTTTCCATGTTGTTTAATAATGCCACCAGCCTGATGACTACTGGGGATATGGACAAAAGACAGAGGTACCATCCAAAGTAACACGTTTCATAGTTAAATATTATTATATTAGTTTAAAGTCTAAATATGCTGCTTttaaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU213640 lncRNA upstream 6057 78704705 ~ 78704989 (+) True G188374
TU213635 lncRNA upstream 17888 78692893 ~ 78693158 (+) True G188369
TU213605 lncRNA upstream 39400 78671345 ~ 78671646 (+) True G188339
TU213594 lncRNA upstream 44518 78666298 ~ 78666528 (+) True G188328
TU213577 lncRNA upstream 57689 78653151 ~ 78653357 (+) True G188313
TU213659 lncRNA downstream 15944 78727674 ~ 78730495 (+) True G188384
TU213865 lncRNA downstream 152008 78863738 ~ 78863975 (+) True G188577
TU214018 lncRNA downstream 289364 79001094 ~ 79006319 (+) True G188721
TU214044 lncRNA downstream 332424 79044154 ~ 79044383 (+) True G188745
TU214192 lncRNA downstream 385935 79097665 ~ 79097880 (+) True G188888
XM_021573061.2 mRNA upstream 130856 78578149 ~ 78580190 (+) False LOC110497055
XM_036956316.1 mRNA upstream 153778 78537027 ~ 78557268 (+) False LOC110502110
XR_005039456.1 mRNA downstream 219693 78931423 ~ 78931476 (+) True LOC118944149
XM_021573107.2 mRNA downstream 391844 79103574 ~ 79151359 (+) False LOC110497132
XM_021573108.2 mRNA downstream 391844 79103574 ~ 79151359 (+) True LOC110497132
XM_021573109.2 mRNA downstream 465298 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA downstream 465300 79177030 ~ 79235909 (+) True LOC110497158
TU213267 other upstream 130984 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 204114 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 441001 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 533463 78137513 ~ 78177583 (+) True G187260
TU212345 other upstream 662246 78047887 ~ 78048800 (+) False LOC110502077
TU216437 other downstream 2043411 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 2053602 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 2054002 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 2353824 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 2356890 81068620 ~ 81070875 (+) True LOC110497314

Expression Profile