RNA id: TU214302


Basic Information

Item Value
RNA id TU214302
length 1504
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G188994
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79243615 ~ 79245118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTATacacatttatttaatccatgaCTTTACACATATTTTCTCATTAACAATGTTTTATTAATTGATCATTACACACTTTCTAATTTTCCTCAAAGTGAATCAAATGAGAGCAAGATCGGAGAGGAACAAAAGCAGAGGCAAAAAGCCACACAAAAAAGCTGGGACACACATTTGTCATGCCGCTTACTCAAAAGGCATGACAAATGTACTGTCAAACTGATATGAGAGGATTCATAATATCCACATAATATCCACAGACAATCACACATAAAAGTGATTTGACTATGAAAGAAAGAGACAGCATAAAGATTATAAtgtaatcagatggaggtgtggAGCAATGGGCACATTGGGACCTGGATCAGTATGGAGAGACAGAGCTCCTAGCCAGAGACACATGGATTCATCAACATCCCTCTCTATGGGGCACATAACAGGGAAAGCCACAGAAATATGATGGCTCTGCTGCTTTGTTACAAAGGAGCCCAGAGAAGTAGAATCCAGAGTTGTGCTTGGAGTTCCACTGTTCTGCCCATTACTGTAATATCTGTGTCCAGATCATGTGTTGTTGTCAGTGTGTCCAGCCAAATCAATTATTTTGTCAGTGAGGGACGCGGTCACTCCTCAGGATTGTACATTGATTTTCATGTTGGCCGTTAACAACAGTTATTAGGTTCCATCACAGTGTAACGCATTACTACACAATTCTAGGACATTGTAAATGGCATATTTCTGTCAATATAGCATATAAGGTGACTTATATGGTAAGTACATGTGATACGTGTACTCCAACATCCACATCTGACCATTGCATCTATTCTCCGAAAGCTGTTCCATATAATCCTATGCGCTACTCAACATGAATGTATTATTTATACAGACCATGTTAATAGACATTGTAAAAAAAGGTTTTGAAAATGCACAGTCTTGAATACTATACATGAAGTTGATTCATACAATATCTACTCTGACTATTGCAAATGTTCTATCACAATCAAAGACCATAGGTTCTGAATTTGATTAAATAATTCTCAAATATGAcagcttttatttattcattAAAGGGCATTGCATGCCAAAAAAGATGAATGACAACTGTTGCTAAGGCATTTGGAAAATACGTGTACATTATATACAGAGACAAAAATAGCAAGAAAAATCCAAACTGCATTAATTAAAATAATAACATCTCGTTGTGTTTCCTTGTAAAAACAAAATCCCAATCCACAGGAAACAACTGAAATATACAGAGGGTTAATATTGAAAGAAAACAGGGGAATGATAAAGAGCATAGACATCAGTGGGCCACAACGTCCCACATTTACCTATCCATAATAAACTATATTAATCCCATGAACATCCAGCCAAATTATCTGACGACGTCTGTTTAGTTTTCACATTTCTGCATGCCTGTTTTTCCAACTCAATGCCTCAAAAGCTTCAAGTGACACATTATCAACAATGTCCTTCCCctcaacctaacccttaacctcaaCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214300 lncRNA upstream 1287 79241668 ~ 79242328 (+) True G188992
TU214297 lncRNA upstream 3005 79240052 ~ 79240610 (+) True G188991
TU214296 lncRNA upstream 4720 79238649 ~ 79238895 (+) True G188990
TU214271 lncRNA upstream 46023 79197088 ~ 79197592 (+) True G188965
TU214251 lncRNA upstream 67794 79175505 ~ 79175821 (+) True G188946
TU214567 lncRNA downstream 111967 79357085 ~ 79357290 (+) True G189241
TU214579 lncRNA downstream 119496 79364614 ~ 79364817 (+) True G189253
TU214713 lncRNA downstream 281777 79526895 ~ 79625282 (+) False G189385
TU214715 lncRNA downstream 281777 79526895 ~ 79625282 (+) True G189385
TU214949 lncRNA downstream 381104 79626222 ~ 79626527 (+) True G189606
XM_021573109.2 mRNA upstream 7706 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA upstream 7706 79177030 ~ 79235909 (+) True LOC110497158
XM_021573107.2 mRNA upstream 92256 79103574 ~ 79151359 (+) False LOC110497132
XM_021573108.2 mRNA upstream 92256 79103574 ~ 79151359 (+) True LOC110497132
XR_005039456.1 mRNA upstream 312139 78931423 ~ 78931476 (+) True LOC118944149
XM_021573124.2 mRNA downstream 671804 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA downstream 671804 79916922 ~ 80048182 (+) True LOC110497165
XM_021573150.2 mRNA downstream 1479242 80724360 ~ 80727535 (+) True rag2
XM_021573226.2 mRNA downstream 1534941 80780059 ~ 80977313 (+) False furinb
XM_021573234.2 mRNA downstream 1534941 80780059 ~ 80977313 (+) True furinb
TU213267 other upstream 663553 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 736683 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 973570 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 1066032 78137513 ~ 78177583 (+) True G187260
TU212345 other upstream 1194815 78047887 ~ 78048800 (+) False LOC110502077
TU216437 other downstream 1510023 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 1520214 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 1520614 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 1820436 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 1823502 81068620 ~ 81070875 (+) True LOC110497314

Expression Profile