RNA id: TU214567



Basic Information


Item Value
RNA id TU214567
length 206
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G189241
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79357085 ~ 79357290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


actcaagTGTTAATgctgaattgtaattatttcgccactatggcctatttattgccttacctacctaatcttactacatttgcacacactgtacatagaccttttctattgtgttattgactgtatgtttgtttatcccatgtgtaactgtgttgtttttgtcccactgctttgctttatcttggccaggtcgcagttgtaaatga

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU214302 lncRNA upstream 111967 79243615 ~ 79245118 (+) True G188994
TU214300 lncRNA upstream 114757 79241668 ~ 79242328 (+) True G188992
TU214297 lncRNA upstream 116475 79240052 ~ 79240610 (+) True G188991
TU214296 lncRNA upstream 118190 79238649 ~ 79238895 (+) True G188990
TU214271 lncRNA upstream 159493 79197088 ~ 79197592 (+) True G188965
TU214579 lncRNA downstream 7324 79364614 ~ 79364817 (+) True G189253
TU214713 lncRNA downstream 169605 79526895 ~ 79625282 (+) False G189385
TU214715 lncRNA downstream 169605 79526895 ~ 79625282 (+) True G189385
TU214949 lncRNA downstream 268932 79626222 ~ 79626527 (+) True G189606
TU215140 lncRNA downstream 409234 79766524 ~ 79766735 (+) True G189789
XM_021573109.2 mRNA upstream 121176 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA upstream 121176 79177030 ~ 79235909 (+) True LOC110497158
XM_021573107.2 mRNA upstream 205726 79103574 ~ 79151359 (+) False LOC110497132
XM_021573108.2 mRNA upstream 205726 79103574 ~ 79151359 (+) True LOC110497132
XR_005039456.1 mRNA upstream 425609 78931423 ~ 78931476 (+) True LOC118944149
XM_021573124.2 mRNA downstream 559632 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA downstream 559632 79916922 ~ 80048182 (+) True LOC110497165
XM_021573150.2 mRNA downstream 1367070 80724360 ~ 80727535 (+) True rag2
XM_021573226.2 mRNA downstream 1422769 80780059 ~ 80977313 (+) False furinb
XM_021573234.2 mRNA downstream 1422769 80780059 ~ 80977313 (+) True furinb
TU213267 other upstream 777023 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 850153 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 1087040 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 1179502 78137513 ~ 78177583 (+) True G187260
TU212345 other upstream 1308285 78047887 ~ 78048800 (+) False LOC110502077
TU216437 other downstream 1397851 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 1408042 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 1408442 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 1708264 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 1711330 81068620 ~ 81070875 (+) True LOC110497314

Expression Profile


TU214567 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

TU214567 Expression in each Bioproject

Bar chart with 19 bars.
TU214567 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.