RNA id: TU215542



Basic Information


Item Value
RNA id TU215542
length 363
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G190182
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80087493 ~ 80087855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgggctatactcagccttgtctcaggatggtaagttggtggttgaagatatccctctagtggtgtgggggctgtgctttggcaaagtgggtggggttatatccttcctgtttggccctgtccgggggtgtcctcggagtgggccacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatgtgttggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatctaagtgtgcgttctctaattctctccttctctctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU215445 lncRNA upstream 7901 80079375 ~ 80079592 (+) True G190090
TU215440 lncRNA upstream 12115 80075094 ~ 80075378 (+) True G190085
TU215429 lncRNA upstream 24409 80062168 ~ 80063084 (+) True G190074
TU215418 lncRNA upstream 47049 80040211 ~ 80040444 (+) True G190063
TU215417 lncRNA upstream 47610 80039683 ~ 80039883 (+) True G190062
TU215553 lncRNA downstream 5257 80093112 ~ 80093321 (+) True G190193
TU215562 lncRNA downstream 10181 80098036 ~ 80098587 (+) True G190202
TU215685 lncRNA downstream 98633 80186488 ~ 80186930 (+) True G190320
TU215776 lncRNA downstream 158557 80246412 ~ 80246632 (+) True G190411
TU215787 lncRNA downstream 165122 80252977 ~ 80253259 (+) True G190422
XM_021573124.2 mRNA upstream 39311 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA upstream 39311 79916922 ~ 80048182 (+) True LOC110497165
XM_021573109.2 mRNA upstream 851584 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA upstream 851584 79177030 ~ 79235909 (+) True LOC110497158
XM_021573108.2 mRNA upstream 936134 79103574 ~ 79151359 (+) True LOC110497132
XM_021573150.2 mRNA downstream 636505 80724360 ~ 80727535 (+) True rag2
XM_021573226.2 mRNA downstream 692204 80780059 ~ 80977313 (+) False furinb
XM_021573234.2 mRNA downstream 692204 80780059 ~ 80977313 (+) True furinb
XM_021573270.2 mRNA downstream 903123 80990978 ~ 80994869 (+) False LOC110497237
XM_021573248.2 mRNA downstream 904329 80992184 ~ 80994869 (+) False LOC110497237
TU213267 other upstream 1507431 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 1580561 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 1817448 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 1909910 78137513 ~ 78177583 (+) True G187260
TU212345 other upstream 2038693 78047887 ~ 78048800 (+) False LOC110502077
TU216437 other downstream 667286 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 677477 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 677877 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 977699 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 980765 81068620 ~ 81070875 (+) True LOC110497314

Expression Profile