RNA id: TU215562



Basic Information


Item Value
RNA id TU215562
length 552
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G190202
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80098036 ~ 80098587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgggtgacttcatgatacatgtcatgtagcacactcattttagAAGTtctcattgtattatctaaaccagatatattgtgttatattctcctacattcaattcacatttacacaaacttcgaAGTGTTTTCTTTCAGATGGTACCAAGAAtgtgcatatccttggttctgtgcctgagctacaggcagttagatttgggtatgtcttcaggcggaaattgaaaaaagtaggggggtaacTCTAAGAGGTTtaattaaacagtccaaaatcacattgtaaaattgtgtaaacagtatcatactcactcattcatcttatacaacaattagacgTAAACCTTATATCtggggctattatataaacagtgtaatggtaatgtggccacaccgtctcctatgagcttcccaagttgtgacaaacaaccagttcgtagctggattcttcaccgatcttttatactttctccggaacatgacatttgttcgtacctcaagttctgtgaggtggaaggatttcctttgtcctctATGAAAATTGATTCTCTCTCTATac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU215553 lncRNA upstream 4715 80093112 ~ 80093321 (+) True G190193
TU215542 lncRNA upstream 10181 80087493 ~ 80087855 (+) True G190182
TU215445 lncRNA upstream 18444 80079375 ~ 80079592 (+) True G190090
TU215440 lncRNA upstream 22658 80075094 ~ 80075378 (+) True G190085
TU215429 lncRNA upstream 34952 80062168 ~ 80063084 (+) True G190074
TU215685 lncRNA downstream 87901 80186488 ~ 80186930 (+) True G190320
TU215776 lncRNA downstream 147825 80246412 ~ 80246632 (+) True G190411
TU215787 lncRNA downstream 154390 80252977 ~ 80253259 (+) True G190422
TU215810 lncRNA downstream 168839 80267426 ~ 80267646 (+) True G190445
TU215824 lncRNA downstream 177797 80276384 ~ 80276632 (+) True G190459
XM_021573124.2 mRNA upstream 49854 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA upstream 49854 79916922 ~ 80048182 (+) True LOC110497165
XM_021573109.2 mRNA upstream 862127 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA upstream 862127 79177030 ~ 79235909 (+) True LOC110497158
XM_021573108.2 mRNA upstream 946677 79103574 ~ 79151359 (+) True LOC110497132
XM_021573150.2 mRNA downstream 625773 80724360 ~ 80727535 (+) True rag2
XM_021573226.2 mRNA downstream 681472 80780059 ~ 80977313 (+) False furinb
XM_021573234.2 mRNA downstream 681472 80780059 ~ 80977313 (+) True furinb
XM_021573270.2 mRNA downstream 892391 80990978 ~ 80994869 (+) False LOC110497237
XM_021573248.2 mRNA downstream 893597 80992184 ~ 80994869 (+) False LOC110497237
TU213267 other upstream 1517974 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 1591104 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 1827991 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 1920453 78137513 ~ 78177583 (+) True G187260
TU212345 other upstream 2049236 78047887 ~ 78048800 (+) False LOC110502077
TU216437 other downstream 656554 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 666745 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 667145 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 966967 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 970033 81068620 ~ 81070875 (+) True LOC110497314

Expression Profile