RNA id: TU215828



Basic Information


Item Value
RNA id TU215828
length 343
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G190463
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80277177 ~ 80277519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACTGCAGTGGcccagagctttttcatgcgcgagaccgagagcgcgcctttcttgtttaccttttatattgacgacgttattgtccagtTTAAATATtgtcgattatttaggctaaaaacaatcaGAGGATttattataaacatcgtttgacatgtttctacgaactttacggatactattttgatttttttgtctgcctgttgtgactgcgtttgagcctgtggattactgaacaaaacgcgtgaacaaaacagaggtttttggatataaacatggactttatcgaacaaaacaaacatttattgagtaaatgggagtctcgtgagtgcaaccatatgaaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU215824 lncRNA upstream 545 80276384 ~ 80276632 (+) True G190459
TU215810 lncRNA upstream 9531 80267426 ~ 80267646 (+) True G190445
TU215787 lncRNA upstream 23918 80252977 ~ 80253259 (+) True G190422
TU215776 lncRNA upstream 30545 80246412 ~ 80246632 (+) True G190411
TU215685 lncRNA upstream 90247 80186488 ~ 80186930 (+) True G190320
TU215832 lncRNA downstream 1376 80278895 ~ 80279102 (+) True G190467
TU215835 lncRNA downstream 4292 80281811 ~ 80282014 (+) True G190470
TU215838 lncRNA downstream 4694 80282213 ~ 80282470 (+) True G190473
TU215841 lncRNA downstream 5964 80283483 ~ 80283727 (+) True G190476
TU215845 lncRNA downstream 8876 80286395 ~ 80286959 (+) True G190480
XM_021573124.2 mRNA upstream 228995 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA upstream 228995 79916922 ~ 80048182 (+) True LOC110497165
XM_021573109.2 mRNA upstream 1041268 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA upstream 1041268 79177030 ~ 79235909 (+) True LOC110497158
XM_021573108.2 mRNA upstream 1125818 79103574 ~ 79151359 (+) True LOC110497132
XM_021573150.2 mRNA downstream 446841 80724360 ~ 80727535 (+) True rag2
XM_021573226.2 mRNA downstream 502540 80780059 ~ 80977313 (+) False furinb
XM_021573234.2 mRNA downstream 502540 80780059 ~ 80977313 (+) True furinb
XM_021573270.2 mRNA downstream 713459 80990978 ~ 80994869 (+) False LOC110497237
XM_021573248.2 mRNA downstream 714665 80992184 ~ 80994869 (+) False LOC110497237
TU213267 other upstream 1697115 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 1770245 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 2007132 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 2099594 78137513 ~ 78177583 (+) True G187260
TU212345 other upstream 2228377 78047887 ~ 78048800 (+) False LOC110502077
TU216437 other downstream 477622 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 487813 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 488213 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 788035 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 791101 81068620 ~ 81070875 (+) True LOC110497314

Expression Profile