RNA id: TU215845



Basic Information


Item Value
RNA id TU215845
length 565
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G190480
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80286395 ~ 80286959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaaaaatattatgaTCACTGTATTATGGGCTACCTGTGTGACTATTTAGTTTTATGGGGCTGTTGTCTAATTCCCTGTGTATTAGGCCTTATTTCCAGGACTCTGGAGAAATCGATGACAATAGATGGTGAGGTACCAGGGGATTCCAGGTTCAGACCCGCGGAGTGCTGCTTGTATGTCTACAGGACAAGTGGACGAATCTGGATCCTTCAGTTGCGGGGAATTTATGTTTGAAGAGACCATTTTTGATGTTTAGGGAGGCTAGGTTGTATCACGTTTCAATAATAGACTGTTTTTTTTATGAAGATTGTAACGAAAATCCTGATAAGAAGAGTTATGATTCTGATGTAGGCCTGAGAAACAATTTTGGCGAATGCAAGTgttgggttatgtttaggtgatgttttgatgACAAGAAATATCtctaataaaaatagaaatgGGCTTTTTAATATTACAATATAACTACATGTGTGATTGGATGTATAATATTTAATCAAAGGGTGGatatgttaagggaatttttatctataatgactaattatgtatacatttcaatcagga

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU215841 lncRNA upstream 2668 80283483 ~ 80283727 (+) True G190476
TU215838 lncRNA upstream 3925 80282213 ~ 80282470 (+) True G190473
TU215835 lncRNA upstream 4381 80281811 ~ 80282014 (+) True G190470
TU215832 lncRNA upstream 7293 80278895 ~ 80279102 (+) True G190467
TU215828 lncRNA upstream 8876 80277177 ~ 80277519 (+) True G190463
TU215878 lncRNA downstream 20059 80307018 ~ 80307262 (+) True G190513
TU215888 lncRNA downstream 28433 80315392 ~ 80341433 (+) True G190523
TU215893 lncRNA downstream 33751 80320710 ~ 80321942 (+) True G190526
TU215932 lncRNA downstream 54776 80341735 ~ 80341961 (+) True G190565
TU215942 lncRNA downstream 60697 80347656 ~ 80347950 (+) True G190575
XM_021573124.2 mRNA upstream 238213 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA upstream 238213 79916922 ~ 80048182 (+) True LOC110497165
XM_021573109.2 mRNA upstream 1050486 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA upstream 1050486 79177030 ~ 79235909 (+) True LOC110497158
XM_021573108.2 mRNA upstream 1135036 79103574 ~ 79151359 (+) True LOC110497132
XM_021573150.2 mRNA downstream 437401 80724360 ~ 80727535 (+) True rag2
XM_021573226.2 mRNA downstream 493100 80780059 ~ 80977313 (+) False furinb
XM_021573234.2 mRNA downstream 493100 80780059 ~ 80977313 (+) True furinb
XM_021573270.2 mRNA downstream 704019 80990978 ~ 80994869 (+) False LOC110497237
XM_021573248.2 mRNA downstream 705225 80992184 ~ 80994869 (+) False LOC110497237
TU213267 other upstream 1706333 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 1779463 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 2016350 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 2108812 78137513 ~ 78177583 (+) True G187260
TU212345 other upstream 2237595 78047887 ~ 78048800 (+) False LOC110502077
TU216437 other downstream 468182 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 478373 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 478773 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 778595 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 781661 81068620 ~ 81070875 (+) True LOC110497314

Expression Profile


TU215845 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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TU215845 Expression in each Bioproject

Bar chart with 19 bars.
TU215845 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.