RNA id: TU216023


Basic Information

Item Value
RNA id TU216023
length 288
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G190654
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80424667 ~ 80436799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggctggaggagaggagagagggaatgagacagagggagagagatttaagttttttttttttttggatccccattagctgttaaagaagcagcagctattcttcctggcaTCCACACAAAACATGGGACAAAATACAGAACACTAATGGACTTGAGgtggtccaccttccctgtggccgACATGATTGCTGTATGtacagtggagaggacatggacTTTACTGCCAACTGTTCATCGTTCTCCTTGAACTCCACCTCCCCTCTGCATCTTCCTGCATTCGAATGCCGg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215945 lncRNA upstream 73780 80350632 ~ 80350887 (+) True G190578
TU215942 lncRNA upstream 76717 80347656 ~ 80347950 (+) True G190575
TU215932 lncRNA upstream 82706 80341735 ~ 80341961 (+) True G190565
TU215888 lncRNA upstream 83234 80315392 ~ 80341433 (+) True G190523
TU215893 lncRNA upstream 102725 80320710 ~ 80321942 (+) True G190526
TU216117 lncRNA downstream 33389 80470038 ~ 80470283 (+) True G190742
TU216135 lncRNA downstream 46527 80483176 ~ 80483451 (+) True G190760
TU216207 lncRNA downstream 100178 80536827 ~ 80537335 (+) True G190832
TU216231 lncRNA downstream 115385 80552034 ~ 80552453 (+) True G190856
TU216265 lncRNA downstream 136912 80573561 ~ 80573765 (+) True G190890
XM_021573124.2 mRNA upstream 376485 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA upstream 376485 79916922 ~ 80048182 (+) True LOC110497165
XM_021573109.2 mRNA upstream 1188758 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA upstream 1188758 79177030 ~ 79235909 (+) True LOC110497158
XM_021573108.2 mRNA upstream 1273308 79103574 ~ 79151359 (+) True LOC110497132
XM_021573150.2 mRNA downstream 287711 80724360 ~ 80727535 (+) True rag2
XM_021573226.2 mRNA downstream 343410 80780059 ~ 80977313 (+) False furinb
XM_021573234.2 mRNA downstream 343410 80780059 ~ 80977313 (+) True furinb
XM_021573270.2 mRNA downstream 554329 80990978 ~ 80994869 (+) False LOC110497237
XM_021573248.2 mRNA downstream 555535 80992184 ~ 80994869 (+) False LOC110497237
TU213267 other upstream 1844605 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 1917735 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 2154622 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 2247084 78137513 ~ 78177583 (+) True G187260
TU212345 other upstream 2375867 78047887 ~ 78048800 (+) False LOC110502077
TU216437 other downstream 318492 80755141 ~ 80756647 (+) True G191052
TU216442 other downstream 328683 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 329083 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 628905 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 631971 81068620 ~ 81070875 (+) True LOC110497314

Expression Profile