RNA id: TU216437


Basic Information

Item Value
RNA id TU216437
length 1431
RNA type TUCP
GC content 0.41
exon number 2
gene id G191052
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80755141 ~ 80756647 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCACTTTATAGTGGTGATGAGTATCAAGCTCACTGAGAAAATGCACATTCACATAGGACTGTCTTAGAAGTATTAGTTAAACTCTAAATGTATGTATCACTTTCATCTAAATTCAACAAGTAGTGATCCCACTTTGTACACAAACAACCAAAATGTGTGACTTTCCACTAATTAATGTTGAATACTTGCGAACAGAACACTGCTGCCAAGCTGTATCAAAAATAGCTTTTTCAACATCAAACCTTGGTCATACTCACCACATGAGGCTGCTATTGTAACATAAATGTTTCCTTTACTACACAGAAAATCTTACTGAAAGTGTGCTTGGCAACAAACAACTACAAATAATAAATTGTTCCTTGCTTGACAAGAACCCTTTATCTCAGCATTGACACttttggtcactttaataatgtttacatactgttttacccactttatatgtatatactgtattctattcaatGCTTATCCTATATATCTACTCCTGTACACaacttttctattcatatactgtctatacacacaccattatatttgtgtatatatacactaccgttcaaaagtttgggcatagaaatgtccttgtttttgaaagaaaagcacatttttctcATTCTcaagtccattaaaataacataaaattgatcagaaatacagtgtagatattgttaatgttgtaaatggccattttagttctaatggcacgttgtgttagctaatccaagtttataatttaaaaGGGCTAATTGGTCATTTgttttgttaggtattactgcactgtttgagctagaaacataagcatttcgctgcatctgcgataacatctgcaaaatatgtgtgcACAAccaatgaaatttgatttgattagtctAATATTACATATTCTCAGAGTGCGTCTGTAAACATTATCCTACAGTGGAGAAATCTCTGATACAGACACAGACTAGAAGCTCCTCTCCCTGGTGAACTGCTAGTGTGAACATGGACCCCTATCAGCTGTGTGCCCAGTCCAGTCCCATTCTGCAGTTAGCTCAGTCTCTGAGCCTGAAGAAGGTTACACTAATACTCCATCACTGTCCTGtgtcctctctattcctcctctcaGGGTACAGACATGTACCTCCTCAGGCCTCTCGCAATGTCTTCATCACTCTGGTCTTCATGACAACGCTGGTGACTCACGATGAACGAGTGCTGGGCGTACGGTACCTGGGAGGCGCCCCGCCACCCATCAGCAGCCTTCATGAGATCTGGCAGGATGTCCGGGACCACACACTGCTCCACCAGGAAGACCACAGGCAGAGCAACCAATAGCAGGGCCCAGCCCAGGGTACCCAGCCAAAAGGAGGAGCCCAGGCATGTGAAGTCATCACTAATCTCCACCCGGTGCTGGTAGGTGAAGAGGGACCAGCTGAGGAGgaagaag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216402 lncRNA upstream 32561 80721510 ~ 80722580 (+) True G191024
TU216404 lncRNA upstream 46411 80708098 ~ 80708730 (+) True G191025
TU216408 lncRNA upstream 50814 80704097 ~ 80704327 (+) True G191028
TU216363 lncRNA upstream 106153 80648652 ~ 80648988 (+) True G190986
TU216354 lncRNA upstream 115054 80639797 ~ 80640087 (+) True G190977
TU216551 lncRNA downstream 154081 80910728 ~ 81327424 (+) True G191161
TU216557 lncRNA downstream 157653 80914300 ~ 80924722 (+) True G191167
TU216603 lncRNA downstream 232240 80988887 ~ 80991854 (+) True LOC110497237
TU216636 lncRNA downstream 275395 81032042 ~ 81033476 (+) False LOC118942351
TU216637 lncRNA downstream 275395 81032042 ~ 81033476 (+) True LOC118942351
XM_021573150.2 mRNA upstream 27606 80724360 ~ 80727535 (+) True rag2
XM_021573124.2 mRNA upstream 706959 79916922 ~ 80048182 (+) False LOC110497165
XM_021573133.2 mRNA upstream 706959 79916922 ~ 80048182 (+) True LOC110497165
XM_021573109.2 mRNA upstream 1519232 79177028 ~ 79235909 (+) False LOC110497158
XM_021573111.2 mRNA upstream 1519232 79177030 ~ 79235909 (+) True LOC110497158
XM_021573226.2 mRNA downstream 23412 80780059 ~ 80977313 (+) False furinb
XM_021573234.2 mRNA downstream 23412 80780059 ~ 80977313 (+) True furinb
XM_021573270.2 mRNA downstream 234331 80990978 ~ 80994869 (+) False LOC110497237
XM_021573248.2 mRNA downstream 235537 80992184 ~ 80994869 (+) False LOC110497237
XM_021573261.2 mRNA downstream 235544 80992191 ~ 80994869 (+) False LOC110497237
TU213267 other upstream 2175079 78579372 ~ 78580062 (+) True LOC110497055
TU213209 other upstream 2248209 78484824 ~ 78506932 (+) True LOC110496993
TU212466 other upstream 2485096 78267289 ~ 78270045 (+) True G187320
TU212400 other upstream 2577558 78137513 ~ 78177583 (+) True G187260
TU212344 other upstream 2706341 78047887 ~ 78048800 (+) False LOC110502077
TU216442 other downstream 8685 80765332 ~ 80766714 (+) False G191057
TU216443 other downstream 9085 80765732 ~ 80766714 (+) True G191057
TU216622 other downstream 308907 81065554 ~ 81068564 (+) False LOC110497314
TU216621 other downstream 311973 81068620 ~ 81070875 (+) True LOC110497314
TU216654 other downstream 327181 81083828 ~ 81086180 (+) False LOC110497320

Expression Profile