RNA id: TU217191


Basic Information

Item Value
RNA id TU217191
length 1425
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G191727
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81049541 ~ 81052986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgtgtgggggggtggggggttcaTGTGTGTTCATGATGTGGGCAGTATGAGAAAACATCCTGTGACTCACATTCTAAGAACTCCTCTCTGGTCTTGGGCTCCAGAGGTCGAACAATTTGCACTTTCATCACTATGGACACACAAACGTTCGAAATGCCACTACTATTCAGTCAGATATTTCTTGTGTGATCTTAATAAATACATGGTCTACTCTTTGCCTTACCATTTTCAGATATCTTGTCTATTTCCTCCTTGCAGATACCATCCAGTTGCACTTTCAGTCCAGAAACCAATTTCTTCACACGTTCAAAAGAAATGTGTGGATTGAAAGTGGGGCTGGGTAGGGCCTCAGAAccaggagggacagagagtgactggaaactctacagtggaaacaGACAAGAAAATAACTAGTCTAGAGACAGTTTCACTTAGATGGCAACTTAGGAACTATGTGTACAGTGTAGGTATGAAGCCAATGATGTCACCTGAAGGAAATAGATGTGATCCTCTGTGTTTGAGAGCTGCCTGAGCTCAGCATCTCTTCTCTTCATCTCAGTGACTTCCTGATCTAGTCGGTCCAGGAGTCCCTGAACCCGACTCCCTGCAATCCTCTCCTGAGCTCtgatcagctccttcacctcAGAACGCCTTCGCTCAATGGAGCGGATCAGCTCAATAAAGATCCTGTCAGTCGCATCCACTGTCACCTGTGCAGAGCGCGTGAGTGTTTTCACAGCCTGCCTAAGCTCCTgtacctccttctccatctcctgGATTCTCTGGTGGTACTGCTGCTGTATTTTACCCAACTGTTTCTGTTTCTCAGTCCTTTCTGCTGCAACTGACACCGTATCATGGCCTTTATGTTCATCCATCACACACAGCAGACAGATACACTGCCGATCAGTACAGCAGtaaacctccagcagtttgtCATGATGAGGGCAGATCTTCTCCTGTCGTTGTGTGGAGGCTTCGACCAGCTTGTGCTTCTTAAAGGCAAGCGAGTCATAATGAGGCTGGAGATGAGTCTCGCAGTATGAGACAAGACACACCAGACAGTACTTGACAGCTTTGTGTTTTCTCCCAGTGCAGACATCACACTCCACATCTTCAGGTCCAGCATAACAGTGAGCAGATGACGCTTGAGGTCCTGTCCTCTTCAGTTTCTCCACCACTTCAACCAAGACAGTGCTCCTGTTCAGAACAGGCCTTGGGGTGAAGGTATGTCTGCACTGGGGACAGCTGTAGACTCCTTTCAGATCATCCTGATCCCAGCAGCCGTTGATACAACCCATACAGTAGCTATGTCCACAATGTATAGTCACTGGATCCTTTAGTAGATCCAAGCATATTGAACAAAAGAACGGATCTTGGTCTTTTAAAATGGCCTCTGCCATTTTGttgcacacaaacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217119 lncRNA downstream 128665 80915679 ~ 80920876 (-) False G191669
TU217120 lncRNA downstream 128665 80915679 ~ 80920876 (-) True G191669
TU217116 lncRNA downstream 129613 80914658 ~ 80919928 (-) False G191668
TU217117 lncRNA downstream 129613 80914658 ~ 80919928 (-) True G191668
TU217027 lncRNA downstream 223795 80805156 ~ 80825746 (-) True G191582
TU217246 lncRNA upstream 30575 81083561 ~ 81086179 (-) False G191777
TU217247 lncRNA upstream 31171 81084157 ~ 81085026 (-) True G191777
TU217309 lncRNA upstream 89438 81142424 ~ 81185888 (-) False G191832
TU217303 lncRNA upstream 125136 81178122 ~ 81185700 (-) False G191832
TU217306 lncRNA upstream 126146 81179132 ~ 81185700 (-) False G191832
XM_021573342.2 mRNA downstream 12355 81034004 ~ 81037186 (-) True tmem17
XM_021573329.2 mRNA downstream 22111 81024623 ~ 81027430 (-) True LOC110497288
XM_021573315.2 mRNA downstream 38627 81008700 ~ 81010914 (-) True LOC110497280
LOC110497262 mRNA downstream 50536 80995022 ~ 80999005 (-) True LOC110497262
XM_021573203.2 mRNA downstream 273183 80766303 ~ 80776358 (-) False accs
XM_021573503.2 mRNA upstream 139578 81192564 ~ 81194099 (-) False cart2
XR_005038428.1 mRNA upstream 186044 81239030 ~ 81240770 (-) False LOC118942622
XM_021573625.2 mRNA upstream 253095 81306081 ~ 81309081 (-) True LOC110497492
NM_001124507.1 mRNA upstream 261083 81314069 ~ 81323099 (-) True sycp3
XM_036933394.1 mRNA upstream 279012 81331998 ~ 81338259 (-) False actr6
TU217118 other downstream 128126 80915679 ~ 80921415 (-) False G191669
TU216232 other downstream 497057 80552127 ~ 80552484 (-) True G190857
TU215157 other downstream 1288914 79760039 ~ 79760627 (-) True G189806
TU214582 other downstream 1682972 79365849 ~ 79366569 (-) True G189256
TU214411 other downstream 1824543 79223230 ~ 79224998 (-) True G189093
TU217319 other upstream 139542 81192528 ~ 81193845 (-) True cart2
TU219436 other upstream 1848654 82901640 ~ 82912504 (-) True G193745
TU219446 other upstream 1952844 83005830 ~ 83007976 (-) True G193755
TU219891 other upstream 2167036 83220022 ~ 83223144 (-) True LOC110502187
TU220290 other upstream 2562580 83615566 ~ 83616034 (-) True G194491

Expression Profile