RNA id: TU217757


Basic Information

Item Value
RNA id TU217757
length 277
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G192224
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81495156 ~ 81495468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtagattcatcaaccttcctgagcttcctctcactcctgagcttcctctcactcctgagcttcccctcagtcccgagctgcccctcagtcccgagctgcccctcagtcccgatctgctcctcagtccagtggggttctgggtgaggactactaggccatggtcggcggcgagggtggactatccagggacgcgaggagaagggactaagacattgattgagtggggtccacgtcccgcgccggagccgccaccatggacagacgcccacccggacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217376 lncRNA downstream 197522 81232539 ~ 81297634 (-) True G191890
TU217374 lncRNA downstream 254407 81232166 ~ 81240749 (-) True LOC118942622
TU217309 lncRNA downstream 309268 81142424 ~ 81185888 (-) False G191832
TU217303 lncRNA downstream 309456 81178122 ~ 81185700 (-) False G191832
TU217306 lncRNA downstream 309456 81179132 ~ 81185700 (-) False G191832
TU217804 lncRNA upstream 42705 81538173 ~ 81539355 (-) True G192255
TU217806 lncRNA upstream 46649 81542117 ~ 81542378 (-) True G192257
TU217807 lncRNA upstream 47692 81543160 ~ 81543408 (-) True G192258
TU217808 lncRNA upstream 49639 81545107 ~ 81545322 (-) True G192259
TU217773 lncRNA upstream 92608 81588076 ~ 81590576 (-) False fanci
XM_021573719.2 mRNA downstream 19611 81414069 ~ 81475545 (-) True LOC110497556
XM_021573705.2 mRNA downstream 102532 81389924 ~ 81392624 (-) True LOC110497549
XM_036956477.1 mRNA downstream 121536 81358946 ~ 81373620 (-) True LOC110497515
XM_021573676.2 mRNA downstream 136536 81350503 ~ 81358620 (-) True LOC110497525
XM_021573668.2 mRNA downstream 136566 81350503 ~ 81358590 (-) False LOC110497525
XR_002469688.2 mRNA upstream 72446 81567914 ~ 81580865 (-) True LOC110497573
trnar-ucg-2 mRNA upstream 89505 81584973 ~ 81585045 (-) True trnar-ucg-2
XM_036956484.1 mRNA upstream 92691 81588159 ~ 81609864 (-) False fanci
XM_021573755.2 mRNA upstream 92691 81588159 ~ 81612943 (-) False fanci
XM_021573764.2 mRNA upstream 92691 81588159 ~ 81612943 (-) False fanci
TU217319 other downstream 301311 81192528 ~ 81193845 (-) True cart2
TU217118 other downstream 573741 80915679 ~ 80921415 (-) False G191669
TU216232 other downstream 942672 80552127 ~ 80552484 (-) True G190857
TU215157 other downstream 1734529 79760039 ~ 79760627 (-) True G189806
TU214582 other downstream 2128587 79365849 ~ 79366569 (-) True G189256
TU219436 other upstream 1406172 82901640 ~ 82912504 (-) True G193745
TU219446 other upstream 1510362 83005830 ~ 83007976 (-) True G193755
TU219891 other upstream 1724554 83220022 ~ 83223144 (-) True LOC110502187
TU220290 other upstream 2120098 83615566 ~ 83616034 (-) True G194491
TU221290 other upstream 2386072 83881540 ~ 83904451 (-) True G195427

Expression Profile