RNA id: TU217855


Basic Information

Item Value
RNA id TU217855
length 1165
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G192304
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81645677 ~ 81646841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaattatttattactagctaattaaatggcaacacaggataaacatacacgCTTAAGTTAaaaacaggtccctagcagaATGACAACAATATGGCTGCTTGTTACAAAAGAGatggtgagggtgagagagacagaaacacttaACATTGGTACATTTAGAAACAACACTCACCTACAGTAACCATAGACTTTGCACACGAACCACTGCCCGCTttgagtaagaaatcatgaatgtatttacatgAAATGCCTGAGTCCACCGTGGGTCTCTCTCGGTGGAAAAGGAGTTGGGCCTTTTCGCGgcacgcttgtaaggctctgattgtccaaaagggTTCCAACAAGTCTTCTACTGTTGTTCTCCTCTGTAGTTGTCCGGTATCCGGTGACTTGTCGTgcagtcctgaacagaactacataatttattttccttcaattcgctcttgaagatgcttctttgaagataggctagccagccgtgTTGACGGTTCCCAGTGGAGTGATGAGAGTAGAGTAATACGATGGTTTGAGCAGAGtagtatcaatcaatcaaatgtatttataaagccctttttacatcagccgatgtcaaagtgctgtacagaaacccagcctaaaacaccaaacagcaagcaatgcagatgtagaagcacggtggctgagGTGAGTTTATTGTCTCTACCTCGTGTTGATATTAAAAGTTCAAACCACTTTAAATGTGCAGCTTGCCACTTTTCTGGTCTAGCATGTTCATTTCTTAACCCATCATTTTATACAGTTTATTTGAAAGGGGAGGTTCCGTCAGGCTGAcatgctctctgacctcactcaggGCGGTGGCTACTTACTGTGCACGGGTATATAAAAACAATGATCTCTTATAGCTTCTCAAGTCACATCCCCCTCATAACAAAAACACTTTCATCATGTTTTATATTACATGCACAACACATAGTGTGGTAGTGGGtgtactttccaagttacagtatttccccTATAACATATTTTATGTCATcataaaataacaaacaaaattacattagtgttctatagatcgcctctgaccattccccacgttctatgttagaaatattgttccagtatttgcTTTGAACGTGTTAGAGTTTCGGCGGGAAAAGTATCTTGAAACAAAGGACATTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217773 lncRNA downstream 55101 81588076 ~ 81590576 (-) False fanci
TU217775 lncRNA downstream 55101 81588201 ~ 81590576 (-) True fanci
TU217808 lncRNA downstream 100355 81545107 ~ 81545322 (-) True G192259
TU217807 lncRNA downstream 102269 81543160 ~ 81543408 (-) True G192258
TU217806 lncRNA downstream 103299 81542117 ~ 81542378 (-) True G192257
TU217857 lncRNA upstream 1577 81648418 ~ 81649132 (-) True G192306
TU217859 lncRNA upstream 4391 81651232 ~ 81651436 (-) True G192308
TU217944 lncRNA upstream 127561 81774402 ~ 81775886 (-) True G192382
TU218407 lncRNA upstream 211862 81858703 ~ 81859065 (-) True G192812
TU218469 lncRNA upstream 291195 81938036 ~ 81938363 (-) True G192870
XM_021573755.2 mRNA downstream 32734 81588159 ~ 81612943 (-) False fanci
XM_021573764.2 mRNA downstream 32734 81588159 ~ 81612943 (-) False fanci
XM_036956484.1 mRNA downstream 35813 81588159 ~ 81609864 (-) False fanci
trnar-ucg-2 mRNA downstream 60632 81584973 ~ 81585045 (-) True trnar-ucg-2
XR_002469688.2 mRNA downstream 64812 81567914 ~ 81580865 (-) True LOC110497573
XM_036956492.1 mRNA upstream 4888 81651729 ~ 81690079 (-) True ces2b
XM_021573905.2 mRNA upstream 693783 82340624 ~ 82353007 (-) False LOC110497629
XM_036956532.1 mRNA upstream 693783 82340624 ~ 82353007 (-) False LOC110497629
XR_005038449.1 mRNA upstream 693783 82340624 ~ 82353007 (-) False LOC110497629
XR_005038450.1 mRNA upstream 693783 82340624 ~ 82353007 (-) False LOC110497629
TU217319 other downstream 451832 81192528 ~ 81193845 (-) True cart2
TU217118 other downstream 724262 80915679 ~ 80921415 (-) False G191669
TU216232 other downstream 1093193 80552127 ~ 80552484 (-) True G190857
TU215157 other downstream 1885050 79760039 ~ 79760627 (-) True G189806
TU214582 other downstream 2279108 79365849 ~ 79366569 (-) True G189256
TU219436 other upstream 1254799 82901640 ~ 82912504 (-) True G193745
TU219446 other upstream 1358989 83005830 ~ 83007976 (-) True G193755
TU219891 other upstream 1573181 83220022 ~ 83223144 (-) True LOC110502187
TU220290 other upstream 1968725 83615566 ~ 83616034 (-) True G194491
TU221290 other upstream 2234699 83881540 ~ 83904451 (-) True G195427

Expression Profile