RNA id: TU217660



Basic Information


Item Value
RNA id TU217660
length 885
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G192144
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81655025 ~ 81658267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acaaatttgaaggggtgtccacatacttttgtatatatagtgtacattatTTATGGCAAAGATCAGGGGTATTGCAGGTAGAGTTGGTAGAGTATTTCTTTACCATCAACTGTAACATGTGATGTTGTGAAGCAGTATCCAAAAACAAACATAAGCTCATCTCCATGGTCAGACCCAACGAAACTCGGCCTCATCTTCTTAAGCATGCTGGGAGTTTGCTGGAACTCATACAGGTACATAGGCACACCTGCCTCTGTGGAAGCCTGCTGTTTTAAGAGCAGGAATGGTAAACAAAGCATCCCCAACCAGCTCAATGAACCCATCACGGTTTTTAATCCGATCTCCAGAGGTTCCCAGGTATTCATCTGCTATCAGCTCAGTTATCCACTGATCCTTAGGCTGAATGAGACAAAGGCCATTCAGCGTAGCCACATCATGCATTGTAATCAGTAATGAGGCATTTCATCTGAGCAATTTCTTGGCAGGTGTGACTGCATATATTTACATCAGGGTAACATAATGCCAAAAGAGGCATGACCTGCTCCCGGTCTATTCCATCCACCCAACCAGGAGGTGCCATCATCTAGGGAGTACAAGGAGTACAACATTCAACCATTGTAATTGGAAAATGAAAATCAAGTCAGTGACACTGTcactcttaaagggatagttctggattttTGCAATGAGgccttttatctacttccccaaatTCAGATGAACTCGTCGATACCATTTTTATGCATCTCAATGCAGTTTGAAagaagttgctaattagctctagtcaatgactggaagtctatgggaacagctaACATGCTAGTTAGAATTTACTTGCGAAACTACCTTTATGTACCTTCATATTGGATGCAGATAcataaaatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU217594 lncRNA upstream 6443 81648349 ~ 81648582 (+) True G192092
TU217635 lncRNA upstream 53371 81599811 ~ 81601654 (+) True G192121
TU217583 lncRNA upstream 97001 81557721 ~ 81558024 (+) True G192082
TU217572 lncRNA upstream 117402 81537125 ~ 81537623 (+) True G192071
TU216844 lncRNA upstream 311175 81343628 ~ 81343850 (+) True G191406
TU217589 lncRNA downstream 116155 81774422 ~ 81775759 (+) True G192087
TU217971 lncRNA downstream 126757 81785024 ~ 81792855 (+) False G192394
TU218068 lncRNA downstream 273719 81931986 ~ 81932495 (+) True G192485
TU218098 lncRNA downstream 316463 81974730 ~ 81975731 (+) True G192515
TU218109 lncRNA downstream 329631 81987898 ~ 81989027 (+) True G192526
XM_021573777.2 mRNA upstream 13225 81614772 ~ 81641800 (+) True LOC110497588
NM_001124577.1 mRNA upstream 139519 81498587 ~ 81515506 (+) True rhcg1-b
XM_021573605.2 mRNA upstream 371509 81266020 ~ 81283516 (+) False nedd1
XM_036956506.1 mRNA downstream 44516 81702783 ~ 81772438 (+) False LOC110497605
XR_005038448.1 mRNA downstream 44518 81702785 ~ 81759748 (+) False LOC110497605
XM_036956494.1 mRNA downstream 44573 81702840 ~ 81772438 (+) False LOC110497605
XM_036956501.1 mRNA downstream 44586 81702853 ~ 81772438 (+) False LOC110497605
XM_036956498.1 mRNA downstream 44728 81702995 ~ 81772438 (+) True LOC110497605
TU216654 other upstream 568845 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 568845 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 584150 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 586461 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 888311 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 708018 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 742846 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 759979 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 994366 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 1461060 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile