RNA id: TU217589


Basic Information

Item Value
RNA id TU217589
length 1338
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G192087
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81774422 ~ 81775759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGAGTGGTTGCCACGGCAACGACATGGGCCTTCTGGACGCCGCCACAGTAATCTGCTGAAAAACAGCGATgaatgatggagggatggggtggcTGAGTttaaaggagggagagatgggcagAGACCAGAGAGGGTGAAATGACTCCCTTCTCTCAATACCTACCTACATGTTCCCATGTTATTTTGATGGCAGGCCCATCCACCCTGATCGTAGATTGGTATATGCTTAGCCAACTCCTCGTTGTATGTATGGCATGACAATGGCCGTCAGGGGAGTTGGCTAAAGCAcattctgggaccaggctaccaggGAACTATCCACCTCCATGCCTTGGAAATCTCCCCCCTAGTGAAGCTTTACAATAAGGATAAGGGTTATCCTGAGATACGTAAAATGCAGAGAACATAGTTTGGActgaaatgaaaataaaaataaaagcccAACATAAAGGGTTTCCAGGGAAATAAATCAGCACTTGTTATAATCTTGTAAaaacaaagccccccccccccccgagccaGGATGTCTCTGACGCTGGCTCACGCTCAGCTGAAACACCAGGGCAGAGGAGTCACTGTTTATGGCTAACACATTTCCTCAACACCCCTTTTATATCTCCCAGGCTCTGAAATACTGTGTGTGTTAAATTCTCTTTCCTATAAATTATCTTTCCCTTGAAGTAATTGCCAATATAACATGATGGGTGAAAACTGTGATTAAATTTAAACCATTGCTTACACCTATTCAATTGTGTTGCATCAGGGAAGTGAATAAGGAAATATGCATATTGAGTGTTTGAGTAAGCCAGgccaaacccactgggcacaccacataTTTTCAACGTGGATAACttggtaatatttggttgagacggtGATCagagattacaacctatattcacccacgcaaaaagacagtcaaaagttagttgaatttccaatgtgttatcactatgcttacAACCATTTattaaaagcacaaccaaatggAAAAACATTGTCAGATGTTTGGTTTAGTTTtcacccaaatgtctatcactgcgctttcaaccatttaaaagcacagcaaagtttaaatgggaatacaatgccagatattttgtttatttacacAACAGATTATGGTATCACTGCTTAATCTAATAGCATAACCGGATGagctggattgcagttgagattacattaaaaaatACATGGTGCAAGTGATTAATGCCGTTCAAGATGATTTATGTTttatcacacctgcccagacccactagtcTCCACCCCTAACTCCCTATCACTTTTTGCCACATGGCCTCAGCCTGCACAATTTTGTTTCTCTCCATTGCCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217660 lncRNA upstream 116155 81655025 ~ 81658267 (+) True G192144
TU217594 lncRNA upstream 125840 81648349 ~ 81648582 (+) True G192092
TU217635 lncRNA upstream 172768 81599811 ~ 81601654 (+) True G192121
TU217583 lncRNA upstream 216398 81557721 ~ 81558024 (+) True G192082
TU217572 lncRNA upstream 236799 81537125 ~ 81537623 (+) True G192071
TU217971 lncRNA downstream 9265 81785024 ~ 81792855 (+) False G192394
TU218068 lncRNA downstream 156227 81931986 ~ 81932495 (+) True G192485
TU218098 lncRNA downstream 198971 81974730 ~ 81975731 (+) True G192515
TU218109 lncRNA downstream 212139 81987898 ~ 81989027 (+) True G192526
TU218242 lncRNA downstream 368557 82144316 ~ 82144900 (+) True G192654
XM_036956506.1 mRNA upstream 1984 81702783 ~ 81772438 (+) False LOC110497605
XM_036956494.1 mRNA upstream 1984 81702840 ~ 81772438 (+) False LOC110497605
XM_036956501.1 mRNA upstream 1984 81702853 ~ 81772438 (+) False LOC110497605
XM_036956498.1 mRNA upstream 1984 81702995 ~ 81772438 (+) True LOC110497605
XR_005038448.1 mRNA upstream 14674 81702785 ~ 81759748 (+) False LOC110497605
XM_021573943.2 mRNA downstream 590424 82366183 ~ 82392379 (+) False LOC110497665
XM_021573934.2 mRNA downstream 590425 82366184 ~ 82393779 (+) False LOC110497665
LOC110497686 mRNA downstream 642035 82417794 ~ 82426875 (+) False LOC110497686
XM_036956613.1 mRNA downstream 831996 82607755 ~ 82644833 (+) False LOC110497700
XM_036956620.1 mRNA downstream 831996 82607755 ~ 82644833 (+) True LOC110497700
TU216654 other upstream 688242 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 688242 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 703547 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 705858 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 1007708 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 590526 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 625354 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 642487 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 876874 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 1343568 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile